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Aliases for GC01P028651 Gene

Subcategory (RNA class) for GC01P028651 Gene

miRNA

Quality Score for this RNA gene is

13.2

Aliases for GC01P028651 Gene

No Aliases found

ORGUL Members for GC01P028651 Gene

No data available for External Ids for GC01P028651 Gene

Summaries for GC01P028651 Gene

GeneCards Summary for GC01P028651 Gene

GC01P028651 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC01P028651 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P028651

Additional gene information for GC01P028651 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P028651 Gene

Genomics for GC01P028651 Gene

GeneHancer (GH) Regulatory Elements for GC01P028651 Gene

Promoters and enhancers for GC01P028651 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028647 Promoter/Enhancer 1.7 Ensembl ENCODE 600.7 -0.1 -144 2.7 MTA3 SP1 CC2D1A ELF3 ZKSCAN8 SIX5 CBFA2T2 ZNF148 NKRF POLR2A ENSG00000270103 GC01P028651 GC01P028675 GC01P028676 GC01P028677 RNU11 SRSF4 GMEB1 TRNAU1AP FAM76A
GH01J028646 Enhancer 0.8 ENCODE 0.7 -2.2 -2231 0.7 CEBPG TFE3 ZNF384 HMG20B IKZF1 CEBPA GATAD2A PKNOX1 IRF2 SOX13 PHACTR4 GC01P028651 LINC01715
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P028651 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P028651 Gene

Genomic Locations for GC01P028651 Gene
chr1:28,648,598-28,648,731
(GRCh38/hg38)
Size:
134 bases
Orientation:
Plus strand

Genomic View for GC01P028651 Gene

Genes around GC01P028651 on UCSC Golden Path with GeneCards custom track

GC01P028651 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P028651 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P028651 Gene

ORGUL Member Location for GC01P028651 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P028651 Gene

Proteins for GC01P028651 Gene

Post-translational modifications for GC01P028651 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P028651 Gene

Domains & Families for GC01P028651 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P028651 Gene

Function for GC01P028651 Gene

Phenotypes From GWAS Catalog for GC01P028651 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P028651 Gene

Localization for GC01P028651 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P028651 Gene

Pathways & Interactions for GC01P028651 Gene

PathCards logo

SuperPathways for GC01P028651 Gene

No Data Available

Interacting Proteins for GC01P028651 Gene

Gene Ontology (GO) - Biological Process for GC01P028651 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P028651 Gene

Drugs & Compounds for GC01P028651 Gene

No Compound Related Data Available

Transcripts for GC01P028651 Gene

fRNAdb Secondary structures for GC01P028651 Gene

  • FR190938
  • FR034640
  • FR043822

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P028651 Gene

No ASD Table

Relevant External Links for GC01P028651 Gene

GeneLoc Exon Structure for
GC01P028651

No data available for mRNA/cDNA for GC01P028651 Gene

Expression for GC01P028651 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P028651 Gene

Orthologs for GC01P028651 Gene

No data available for Orthologs and Evolution for GC01P028651 Gene

Paralogs for GC01P028651 Gene

No data available for Paralogs for GC01P028651 Gene

Variants for GC01P028651 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P028651 Gene

Disorders for GC01P028651 Gene

No disorders were found for GC01P028651 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P028651 Gene

Publications for GC01P028651 Gene

  1. Mouse microRNA profiles determined with a new and sensitive cloning method. (PMID: 16973894) Takada S … Mano H (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P028651 Gene

Products for GC01P028651 Gene

Sources for GC01P028651 Gene

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