Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC01P027395 Gene

Subcategory (RNA class) for GC01P027395 Gene

undefined

Quality Score for this RNA gene is

13.4

Aliases for GC01P027395 Gene

No Aliases found

ORGUL Members for GC01P027395 Gene

No data available for External Ids for GC01P027395 Gene

Summaries for GC01P027395 Gene

GeneCards Summary for GC01P027395 Gene

GC01P027395 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01P027395 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P027395

Additional gene information for GC01P027395 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P027395 Gene

Genomics for GC01P027395 Gene

GeneHancer (GH) Regulatory Elements for GC01P027395 Gene

Promoters and enhancers for GC01P027395 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J027391 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.9 -1867 5 SP1 CC2D1A CTCF ZFX ZNF148 NKRF GTF2F1 ZNF384 MCM2 ZBTB7A GC01P027395 GPR3 CD164L2 EYA3 GPATCH3 ARID1A DNAJC8 PHACTR4
GH01J027396 Enhancer 0.5 dbSUPER 600.7 +1.9 1941 0.9 SP1 ZNF121 ZNF600 ZNF24 GC01P027395 RNU6-48P ACTG1P20 TMEM222 GC01M027458 PIR34425
GH01J027398 Enhancer 0.7 ENCODE dbSUPER 0.7 +3.9 3911 1 PATZ1 POLR2A TARDBP ZFHX2 FOXA1 ZBTB33 KDM1A ENSG00000243659 RNU6-48P TMEM222 ACTG1P20 GC01P027395 GC01M027458 PIR34425
GH01J027401 Enhancer 1 ENCODE dbSUPER 0.4 +9.3 9283 6.2 MLLT1 CTCF POLR2A RAD21 PKNOX1 REST TRIM22 PATZ1 CBFB SCRT2 GC01M027458 PIR34425 PIR57657 CD164L2 WASF2 RNU6-48P TMEM222 ACTG1P20 ENSG00000243659 MAP3K6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P027395 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P027395 Gene

Genomic Locations for GC01P027395 Gene
chr1:27,395,416-27,395,764
(GRCh38/hg38)
Size:
349 bases
Orientation:
Plus strand

Genomic View for GC01P027395 Gene

Genes around GC01P027395 on UCSC Golden Path with GeneCards custom track

GC01P027395 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P027395 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P027395 Gene

ORGUL Member Location for GC01P027395 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P027395 Gene

Proteins for GC01P027395 Gene

Post-translational modifications for GC01P027395 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P027395 Gene

Domains & Families for GC01P027395 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P027395 Gene

Function for GC01P027395 Gene

Phenotypes From GWAS Catalog for GC01P027395 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P027395 Gene

Localization for GC01P027395 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P027395 Gene

Pathways & Interactions for GC01P027395 Gene

PathCards logo

SuperPathways for GC01P027395 Gene

No Data Available

Interacting Proteins for GC01P027395 Gene

Gene Ontology (GO) - Biological Process for GC01P027395 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P027395 Gene

Drugs & Compounds for GC01P027395 Gene

No Compound Related Data Available

Transcripts for GC01P027395 Gene

fRNAdb Secondary structures for GC01P027395 Gene

  • FR273787

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P027395 Gene

No ASD Table

Relevant External Links for GC01P027395 Gene

GeneLoc Exon Structure for
GC01P027395

No data available for mRNA/cDNA for GC01P027395 Gene

Expression for GC01P027395 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P027395 Gene

Orthologs for GC01P027395 Gene

No data available for Orthologs and Evolution for GC01P027395 Gene

Paralogs for GC01P027395 Gene

No data available for Paralogs for GC01P027395 Gene

Variants for GC01P027395 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P027395 Gene

Disorders for GC01P027395 Gene

No disorders were found for GC01P027395 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P027395 Gene

Publications for GC01P027395 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P027395 Gene

Products for GC01P027395 Gene

Sources for GC01P027395 Gene

Content
Loading form....