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Aliases for GC01P025966 Gene

Subcategory (RNA class) for GC01P025966 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01P025966 Gene

No Aliases found

ORGUL Members for GC01P025966 Gene

No data available for External Ids for GC01P025966 Gene

Summaries for GC01P025966 Gene

GeneCards Summary for GC01P025966 Gene

GC01P025966 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01P025966 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC01P025966 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P025966 Gene

Genomics for GC01P025966 Gene

GeneHancer (GH) Regulatory Elements for GC01P025966 Gene

Promoters and enhancers for GC01P025966 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J025922 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 -41.2 -41162 2 EGR1 SMARCA4 MTA1 GLIS2 IKZF1 ZBTB8A ZSCAN4 PKNOX1 POLR2A LEF1 MTFR1L EXTL1 STMN1 GC01P025966
GH01J025958 Enhancer 0.7 Ensembl ENCODE 0.4 -5.6 -5575 1 TRIM24 FOS TRIM28 ZBTB33 PAFAH2 GC01P025966 STMN1
GH01J025932 Enhancer 0.9 dbSUPER 0.3 -30.4 -30393 1.9 ZFX ZKSCAN8 CBFA2T2 MLLT1 GTF2F1 BACH1 TRIM24 ZNF639 SMARCA4 MTA1 MTFR1L RNU6-110P STMN1 ENSG00000252190 ENSG00000252691 EXTL1 TRIM63 FAM110D SELENON GC01P025966
GH01J025917 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -46.1 -46096 2.2 CBFA2T2 EGR1 IKZF1 PKNOX1 HDAC1 GATAD2A GABPA NR2C2 ZFHX2 CREM RNU6-110P ENSG00000252190 ENSG00000252691 EXTL1 SLC30A2 MTFR1L STMN1 GC01P025966
GH01J025911 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -51.7 -51724 1.7 SMARCA4 ZNF316 FOXA2 TRIM28 ZNF18 DPF2 JUND JUN ZNF664 ZEB2 MTFR1L RNU6-110P ENSG00000252190 ENSG00000252691 EXTL1 TRIM63 STMN1 GC01P025966
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P025966 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P025966 Gene

Genomic Locations for GC01P025966 Gene
chr1:25,964,196-25,964,300
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC01P025966 Gene

Genes around GC01P025966 on UCSC Golden Path with GeneCards custom track

GC01P025966 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P025966 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P025966 Gene

Proteins for GC01P025966 Gene

Post-translational modifications for GC01P025966 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P025966 Gene

Domains & Families for GC01P025966 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P025966 Gene

Function for GC01P025966 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P025966 Gene

Localization for GC01P025966 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P025966 Gene

Pathways & Interactions for GC01P025966 Gene

PathCards logo

SuperPathways for GC01P025966 Gene

No Data Available

Interacting Proteins for GC01P025966 Gene

Gene Ontology (GO) - Biological Process for GC01P025966 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P025966 Gene

Drugs & Compounds for GC01P025966 Gene

No Compound Related Data Available

Transcripts for GC01P025966 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P025966 Gene

No ASD Table

Relevant External Links for GC01P025966 Gene

GeneLoc Exon Structure for
GC01P025966

No data available for mRNA/cDNA for GC01P025966 Gene

Expression for GC01P025966 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P025966 Gene

Orthologs for GC01P025966 Gene

No data available for Orthologs and Evolution for GC01P025966 Gene

Paralogs for GC01P025966 Gene

No data available for Paralogs for GC01P025966 Gene

Variants for GC01P025966 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P025966 Gene

Disorders for GC01P025966 Gene

No disorders were found for GC01P025966 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P025966 Gene

Publications for GC01P025966 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01P025966 Gene

Products for GC01P025966 Gene

Sources for GC01P025966 Gene

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