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Aliases for GC01P024538 Gene

Subcategory (RNA class) for GC01P024538 Gene

lncRNA

Quality Score for this RNA gene is

19

Aliases for GC01P024538 Gene

No Aliases found

No data available for External Ids for GC01P024538 Gene

Summaries for GC01P024538 Gene

GeneCards Summary for GC01P024538 Gene

GC01P024538 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC01P024538 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for GC01P024538

Additional gene information for GC01P024538 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P024538 Gene

Genomics for GC01P024538 Gene

GeneHancer (GH) Regulatory Elements for GC01P024538 Gene

Promoters and enhancers for GC01P024538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024539 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +2.2 2190 3 CC2D1A ELF3 CTCF CEBPG SP7 SP1 HNF1A PPARG PRDM1 FOSL2 RCAN3 NIPAL3 TMEM50A GC01P024538 GC01P024539 NCMAP-DT
GH01J024534 Enhancer 1 ENCODE dbSUPER 0.7 -2.2 -2153 3.5 ZNF652 RELA SP7 CREM EGR1 IKZF1 ZNF600 IKZF2 GATAD2A ATF1 RCAN3AS RCAN3 NIPAL3 TMEM50A GC01P024538 GC01P024539
GH01J024551 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +13.4 13359 1.9 ELF3 MNT CEBPG TFE3 SP1 HNF1A SP5 RXRA RFX1 CEBPA NCMAP NCMAP-DT NIPAL3 GC01P024538 GC01P024539
GH01J024549 Enhancer 1 Ensembl dbSUPER 0.4 +9.8 9786 2.6 CEBPG SP1 KAT8 RXRA CEBPA GATAD2A RXRB ATF7 RCOR2 KMT2B SRSF10 SRRM1 ENSG00000261349 ELOA NIPAL3 GC01P024538 GC01P024539 NCMAP-DT
GH01J024544 Enhancer 0.4 Ensembl 0.4 +6.7 6686 1.2 MAFK MYNN NIPAL3 GC01P024538 GC01P024539 NCMAP-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P024538 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P024538 Gene

Genomic Locations for GC01P024538 Gene
chr1:24,538,715-24,539,245
(GRCh38/hg38)
Size:
531 bases
Orientation:
Plus strand
chr1:24,538,567-24,539,180
(GRCh37/hg19)
Size:
614 bases
Orientation:
Plus strand

Genomic View for GC01P024538 Gene

Genes around GC01P024538 on UCSC Golden Path with GeneCards custom track

GC01P024538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P024538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P024538 Gene

ORGUL Member Location for GC01P024538 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P024538 Gene

Proteins for GC01P024538 Gene

Post-translational modifications for GC01P024538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P024538 Gene

Domains & Families for GC01P024538 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P024538 Gene

Function for GC01P024538 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P024538 Gene

Localization for GC01P024538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P024538 Gene

Pathways & Interactions for GC01P024538 Gene

PathCards logo

SuperPathways for GC01P024538 Gene

No Data Available

Interacting Proteins for GC01P024538 Gene

Gene Ontology (GO) - Biological Process for GC01P024538 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P024538 Gene

Drugs & Compounds for GC01P024538 Gene

No Compound Related Data Available

Transcripts for GC01P024538 Gene

fRNAdb Secondary structures for GC01P024538 Gene

  • FR277388

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P024538 Gene

No ASD Table

Relevant External Links for GC01P024538 Gene

GeneLoc Exon Structure for
GC01P024538

No data available for mRNA/cDNA for GC01P024538 Gene

Expression for GC01P024538 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P024538 Gene

Orthologs for GC01P024538 Gene

No data available for Orthologs and Evolution for GC01P024538 Gene

Paralogs for GC01P024538 Gene

No data available for Paralogs for GC01P024538 Gene

Variants for GC01P024538 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P024538 Gene

Disorders for GC01P024538 Gene

No disorders were found for GC01P024538 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P024538 Gene

Publications for GC01P024538 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

No data available for External Links for GC01P024538 Gene

Products for GC01P024538 Gene

Sources for GC01P024538 Gene

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