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Aliases for GC01P024325 Gene

Subcategory (RNA class) for GC01P024325 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC01P024325 Gene

No Aliases found

ORGUL Members for GC01P024325 Gene

No data available for External Ids for GC01P024325 Gene

Summaries for GC01P024325 Gene

GeneCards Summary for GC01P024325 Gene

GC01P024325 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01P024325 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01P024325

Additional gene information for GC01P024325 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P024325 Gene

Genomics for GC01P024325 Gene

GeneHancer (GH) Regulatory Elements for GC01P024325 Gene

Promoters and enhancers for GC01P024325 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024362 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +39.6 39566 3.6 CREM PRDM1 IKZF1 FOSL2 ZNF600 ZIC2 PKNOX1 ZNF629 CEBPB CHD2 STPG1 NIPAL3 GRHL3 PNRC2 GC01P024325
GH01J024329 Enhancer 0.8 ENCODE dbSUPER 0.4 +5.3 5329 1.4 MZF1 ZNF692 CEBPB ZBTB44 NFIC CEBPG ZNF660 ZBTB12 REST CBFA2T3 GC01P024325 GRHL3 NIPAL3
GH01J024390 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.2 +67.6 67612 3.4 SP1 CC2D1A CTCF SP7 RELA CREM RAD21 IKZF1 RXRA ARID2 STPG1 NIPAL3 IFNLR1 GRHL3 ENSG00000232298 NCMAP GC01P024325
GH01J024351 Enhancer 1 Ensembl dbSUPER 0.3 +26.8 26837 1.6 ZNF473 ZNF174 IKZF1 ZNF221 ZNF300 ZNF600 PRDM10 IKZF2 RELA ZNF629 SRRM1 SRSF10 ZNF436-AS1 ENSG00000261349 NIPAL3 STPG1 GC01P024325 GRHL3
GH01J024371 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +49.0 49036 4.4 SP1 ZNF121 MAFK CREM SCRT2 EED RUNX3 DPF2 FOSL2 GATA3 NIPAL3 GRHL3 ENSG00000232298 STPG1 GC01P024325
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P024325 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P024325 Gene

Genomic Locations for GC01P024325 Gene
chr1:24,324,964-24,325,190
(GRCh38/hg38)
Size:
227 bases
Orientation:
Plus strand

Genomic View for GC01P024325 Gene

Genes around GC01P024325 on UCSC Golden Path with GeneCards custom track

GC01P024325 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P024325 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P024325 Gene

ORGUL Member Location for GC01P024325 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P024325 Gene

Proteins for GC01P024325 Gene

Post-translational modifications for GC01P024325 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P024325 Gene

Domains & Families for GC01P024325 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P024325 Gene

Function for GC01P024325 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P024325 Gene

Localization for GC01P024325 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P024325 Gene

Pathways & Interactions for GC01P024325 Gene

PathCards logo

SuperPathways for GC01P024325 Gene

No Data Available

Interacting Proteins for GC01P024325 Gene

Gene Ontology (GO) - Biological Process for GC01P024325 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P024325 Gene

Drugs & Compounds for GC01P024325 Gene

No Compound Related Data Available

Transcripts for GC01P024325 Gene

fRNAdb Secondary structures for GC01P024325 Gene

  • FR227637
  • FR021847

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P024325 Gene

No ASD Table

Relevant External Links for GC01P024325 Gene

GeneLoc Exon Structure for
GC01P024325

No data available for mRNA/cDNA for GC01P024325 Gene

Expression for GC01P024325 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P024325 Gene

Orthologs for GC01P024325 Gene

No data available for Orthologs and Evolution for GC01P024325 Gene

Paralogs for GC01P024325 Gene

No data available for Paralogs for GC01P024325 Gene

Variants for GC01P024325 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P024325 Gene

Disorders for GC01P024325 Gene

No disorders were found for GC01P024325 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P024325 Gene

Publications for GC01P024325 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC01P024325 Gene

Products for GC01P024325 Gene

Sources for GC01P024325 Gene

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