Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC01P023610 Gene

Subcategory (RNA class) for GC01P023610 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01P023610 Gene

No Aliases found

ORGUL Members for GC01P023610 Gene

No data available for External Ids for GC01P023610 Gene

Summaries for GC01P023610 Gene

GeneCards Summary for GC01P023610 Gene

GC01P023610 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01P023610 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

View fRNAdb secondary structures for GC01P023610

Additional gene information for GC01P023610 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P023610 Gene

Genomics for GC01P023610 Gene

GeneHancer (GH) Regulatory Elements for GC01P023610 Gene

Promoters and enhancers for GC01P023610 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J023609 Enhancer 0.4 ENCODE dbSUPER 600.7 +0.5 528 1.5 GC01P023610 MDS2 ID3 E2F2 ENSG00000229239
GH01J023616 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +9.7 9676 5.5 NKRF ZSCAN21 NCOA3 EGR1 SMARCA4 MTA1 IKZF1 POLR2A DPF2 ZBTB8A SRSF10 MDS2 ID3 HNRNPR E2F2 PNRC2 LINC01355 KDM1A GC01P023610 ENSG00000229239
GH01J023611 Enhancer 1 ENCODE dbSUPER 0.7 +4.3 4318 5.1 CBFA2T2 CREM IKZF1 DPF2 POLR2A IKZF2 ZNF24 PKNOX1 SP2 SCRT2 MDS2 ID3 E2F2 GC01P023610 ENSG00000229239
GH01J023626 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.4 +17.5 17462 2 GTF2F1 ZNF384 MCM2 MZF1 IKZF1 CREB1 GMEB1 ZBTB8A ATF1 PKNOX1 SRSF10 RPL11 PNRC2 ELOA LINC01355 FUCA1 HNRNPR ID3 MDS2 E2F2
GH01J023637 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.3 +27.8 27816 0.8 ZNF652 CC2D1A CTCF CEBPG YY1 SP7 PPARG CREM RAD21 KAT8 MDS2 ID3 GC01P023610 ENSG00000229239
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P023610 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P023610 Gene

Genomic Locations for GC01P023610 Gene
chr1:23,609,930-23,610,049
(GRCh38/hg38)
Size:
120 bases
Orientation:
Plus strand

Genomic View for GC01P023610 Gene

Genes around GC01P023610 on UCSC Golden Path with GeneCards custom track

GC01P023610 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P023610 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P023610 Gene

ORGUL Member Location for GC01P023610 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P023610 Gene

Proteins for GC01P023610 Gene

Post-translational modifications for GC01P023610 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P023610 Gene

Domains & Families for GC01P023610 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P023610 Gene

Function for GC01P023610 Gene

Phenotypes From GWAS Catalog for GC01P023610 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P023610 Gene

Localization for GC01P023610 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P023610 Gene

Pathways & Interactions for GC01P023610 Gene

PathCards logo

SuperPathways for GC01P023610 Gene

No Data Available

Interacting Proteins for GC01P023610 Gene

Gene Ontology (GO) - Biological Process for GC01P023610 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P023610 Gene

Drugs & Compounds for GC01P023610 Gene

No Compound Related Data Available

Transcripts for GC01P023610 Gene

fRNAdb Secondary structures for GC01P023610 Gene

  • FR333370
  • FR015141

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P023610 Gene

No ASD Table

Relevant External Links for GC01P023610 Gene

GeneLoc Exon Structure for
GC01P023610

No data available for mRNA/cDNA for GC01P023610 Gene

Expression for GC01P023610 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P023610 Gene

Orthologs for GC01P023610 Gene

No data available for Orthologs and Evolution for GC01P023610 Gene

Paralogs for GC01P023610 Gene

No data available for Paralogs for GC01P023610 Gene

Variants for GC01P023610 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P023610 Gene

Disorders for GC01P023610 Gene

No disorders were found for GC01P023610 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P023610 Gene

Publications for GC01P023610 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01P023610 Gene

Products for GC01P023610 Gene

Sources for GC01P023610 Gene

Content
Loading form....