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Aliases for GC01P009083 Gene

Subcategory (RNA class) for GC01P009083 Gene

scaRNA

Quality Score for this RNA gene is

15

Aliases for GC01P009083 Gene

No Aliases found

ORGUL Members for GC01P009083 Gene

No data available for External Ids for GC01P009083 Gene

Summaries for GC01P009083 Gene

GeneCards Summary for GC01P009083 Gene

GC01P009083 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC01P009083 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC01P009083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P009083 Gene

Genomics for GC01P009083 Gene

GeneHancer (GH) Regulatory Elements for GC01P009083 Gene

Promoters and enhancers for GC01P009083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009082 Promoter/Enhancer 0.9 Ensembl ENCODE 600.7 +0.4 399 1.5 CEBPB GABPA POLR2A ENSG00000252404 GC01P009083 GPR157 SLC2A5
GH01J009066 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 0.4 -14.2 -14238 4.4 SP1 ELF3 MNT NKRF CEBPG ZNF687 TFE3 TRIM24 RELA CREM SLC2A5 SLC2A7 RNU6-304P GC01P009083 PIR51806
GH01J009074 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 -7.1 -7087 2.7 SP1 ELF3 ZNF121 SP7 CREM PRDM1 MLLT1 SMARCA4 ZBED1 MTA1 SLC2A7 RNU6-304P SLC2A5 GPR157 GC01P009083 PIR51806
GH01J009077 Enhancer 0.9 ENCODE 0.7 -3.1 -3068 3.8 SP1 ZKSCAN8 ZNF687 BACH1 RELA CREM MLLT1 ZNF639 ZBED1 IKZF1 RERE SLC2A5 GPR157 GC01P009083 PIR51806
GH01J009036 Enhancer 0.9 Ensembl ENCODE 0.3 -45.2 -45240 2.3 ZNF687 NCOA3 RELA IKZF1 CREB1 IKZF2 ATF1 CTBP1 PKNOX1 RFX1 PIR51806 SLC2A5 GC01P009083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P009083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P009083 Gene

Genomic Locations for GC01P009083 Gene
chr1:9,082,695-9,082,879
(GRCh38/hg38)
Size:
185 bases
Orientation:
Plus strand

Genomic View for GC01P009083 Gene

Genes around GC01P009083 on UCSC Golden Path with GeneCards custom track

GC01P009083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P009083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P009083 Gene

Proteins for GC01P009083 Gene

Post-translational modifications for GC01P009083 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P009083 Gene

Domains & Families for GC01P009083 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P009083 Gene

Function for GC01P009083 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P009083 Gene

Localization for GC01P009083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P009083 Gene

Pathways & Interactions for GC01P009083 Gene

PathCards logo

SuperPathways for GC01P009083 Gene

No Data Available

Interacting Proteins for GC01P009083 Gene

Gene Ontology (GO) - Biological Process for GC01P009083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P009083 Gene

Drugs & Compounds for GC01P009083 Gene

No Compound Related Data Available

Transcripts for GC01P009083 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P009083 Gene

No ASD Table

Relevant External Links for GC01P009083 Gene

GeneLoc Exon Structure for
GC01P009083

No data available for mRNA/cDNA for GC01P009083 Gene

Expression for GC01P009083 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P009083 Gene

Orthologs for GC01P009083 Gene

No data available for Orthologs and Evolution for GC01P009083 Gene

Paralogs for GC01P009083 Gene

No data available for Paralogs for GC01P009083 Gene

Variants for GC01P009083 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P009083 Gene

Disorders for GC01P009083 Gene

No disorders were found for GC01P009083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P009083 Gene

Publications for GC01P009083 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  3. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 1

No data available for External Links for GC01P009083 Gene

Products for GC01P009083 Gene

Sources for GC01P009083 Gene

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