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Aliases for GC01P001214 Gene

Subcategory (RNA class) for GC01P001214 Gene

miRNA

Quality Score for this RNA gene is

15.2

Aliases for GC01P001214 Gene

No Aliases found

No data available for External Ids for GC01P001214 Gene

Summaries for GC01P001214 Gene

GeneCards Summary for GC01P001214 Gene

GC01P001214 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC01P001214 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for GC01P001214

Additional gene information for GC01P001214 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P001214 Gene

Genomics for GC01P001214 Gene

GeneHancer (GH) Regulatory Elements for GC01P001214 Gene

Promoters and enhancers for GC01P001214 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J001168 Enhancer 0.6 dbSUPER 600.7 +1.3 1289 0.6 HNF1A GLIS2 SOX13 GATAD2A SAP130 POLR2A GABPB1 ARID4B RARA ENSG00000272141 GC01P001208 GC01P001214 GC01P001216 GC01P001218 GC01P001219 GC01P001220 MIR200A MIR200B MIR429
GH01J001162 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.7 -2.6 -2636 5.3 ELF3 AHR POLR2A EGR1 CREB1 GATAD2A RXRB ZFX GTF2F1 KMT2B TTLL10 ENSG00000230092 SDF4 ENSG00000272141 GC01P001160 GC01P001214 GC01M001138
GH01J001161 Enhancer 0.3 dbSUPER 0.4 -5.7 -5725 0.7 POLR2A GC01P001160 LINC01786 UBE2J2 GC01P001214 GC01M001138
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P001214 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P001214 Gene

Genomic Locations for GC01P001214 Gene
chr1:1,167,089-1,167,229
(GRCh38/hg38)
Size:
141 bases
Orientation:
Plus strand
chr1:1,214,082-1,214,115
(GRCh37/hg19)
Size:
34 bases
Orientation:
Plus strand

Genomic View for GC01P001214 Gene

Genes around GC01P001214 on UCSC Golden Path with GeneCards custom track

GC01P001214 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P001214 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P001214 Gene

ORGUL Member Location for GC01P001214 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P001214 Gene

Proteins for GC01P001214 Gene

Post-translational modifications for GC01P001214 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P001214 Gene

Domains & Families for GC01P001214 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P001214 Gene

Function for GC01P001214 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P001214 Gene

Localization for GC01P001214 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P001214 Gene

Pathways & Interactions for GC01P001214 Gene

PathCards logo

SuperPathways for GC01P001214 Gene

No Data Available

Interacting Proteins for GC01P001214 Gene

Gene Ontology (GO) - Biological Process for GC01P001214 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P001214 Gene

Drugs & Compounds for GC01P001214 Gene

No Compound Related Data Available

Transcripts for GC01P001214 Gene

fRNAdb Secondary structures for GC01P001214 Gene

  • FR227560
  • FR134845

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P001214 Gene

No ASD Table

Relevant External Links for GC01P001214 Gene

GeneLoc Exon Structure for
GC01P001214

No data available for mRNA/cDNA for GC01P001214 Gene

Expression for GC01P001214 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P001214 Gene

Orthologs for GC01P001214 Gene

No data available for Orthologs and Evolution for GC01P001214 Gene

Paralogs for GC01P001214 Gene

No data available for Paralogs for GC01P001214 Gene

Variants for GC01P001214 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P001214 Gene

Disorders for GC01P001214 Gene

No disorders were found for GC01P001214 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P001214 Gene

Publications for GC01P001214 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Clustering and conservation patterns of human microRNAs. (PMID: 15891114) Altuvia Y … Margalit H (Nucleic acids research 2005) 1
  4. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  5. New microRNAs from mouse and human. (PMID: 12554859) Lagos-Quintana M … Tuschl T (RNA (New York, N.Y.) 2003) 1

No data available for External Links for GC01P001214 Gene

Products for GC01P001214 Gene

Sources for GC01P001214 Gene

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