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Aliases for GC01P001078 Gene

Subcategory (RNA class) for GC01P001078 Gene

tRNA

Quality Score for this RNA gene is

15

Aliases for GC01P001078 Gene

No Aliases found

No data available for External Ids for GC01P001078 Gene

Summaries for GC01P001078 Gene

GeneCards Summary for GC01P001078 Gene

GC01P001078 is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for GC01P001078 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

View fRNAdb secondary structures for GC01P001078

Additional gene information for GC01P001078 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01P001078 Gene

Genomics for GC01P001078 Gene

GeneHancer (GH) Regulatory Elements for GC01P001078 Gene

Promoters and enhancers for GC01P001078 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J000639 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -0.5 -463 4.4 ENSG00000278791 GC01P001078 GC01P001079 GC01P001081 GC01P001082 GC01P001083 MTATP6P1 MTATP8P1 MTCO1P12 MTCO2P12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01P001078 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01P001078 Gene

Genomic Locations for GC01P001078 Gene
chr1:633,463-633,533
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand

Genomic View for GC01P001078 Gene

Genes around GC01P001078 on UCSC Golden Path with GeneCards custom track

GC01P001078 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01P001078 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01P001078 Gene

ORGUL Member Location for GC01P001078 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01P001078 Gene

Proteins for GC01P001078 Gene

Post-translational modifications for GC01P001078 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01P001078 Gene

Domains & Families for GC01P001078 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01P001078 Gene

Function for GC01P001078 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01P001078 Gene

Localization for GC01P001078 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01P001078 Gene

Pathways & Interactions for GC01P001078 Gene

PathCards logo

SuperPathways for GC01P001078 Gene

No Data Available

Interacting Proteins for GC01P001078 Gene

Gene Ontology (GO) - Biological Process for GC01P001078 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01P001078 Gene

Drugs & Compounds for GC01P001078 Gene

No Compound Related Data Available

Transcripts for GC01P001078 Gene

fRNAdb Secondary structures for GC01P001078 Gene

  • FR332006

Alternative Splicing Database (ASD) splice patterns (SP) for GC01P001078 Gene

No ASD Table

Relevant External Links for GC01P001078 Gene

GeneLoc Exon Structure for
GC01P001078

No data available for mRNA/cDNA for GC01P001078 Gene

Expression for GC01P001078 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01P001078 Gene

Orthologs for GC01P001078 Gene

No data available for Orthologs and Evolution for GC01P001078 Gene

Paralogs for GC01P001078 Gene

No data available for Paralogs for GC01P001078 Gene

Variants for GC01P001078 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01P001078 Gene

Disorders for GC01P001078 Gene

No disorders were found for GC01P001078 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01P001078 Gene

Publications for GC01P001078 Gene

  1. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe TM … Eddy SR (Nucleic acids research 1997) 1
  2. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou YM (Trends in biochemical sciences 1993) 1

No data available for External Links for GC01P001078 Gene

Products for GC01P001078 Gene

Sources for GC01P001078 Gene

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