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Aliases for GC01M244942 Gene

Subcategory (RNA class) for GC01M244942 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC01M244942 Gene

No Aliases found

ORGUL Members for GC01M244942 Gene

No data available for External Ids for GC01M244942 Gene

Summaries for GC01M244942 Gene

GeneCards Summary for GC01M244942 Gene

GC01M244942 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC01M244942 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC01M244942

Additional gene information for GC01M244942 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M244942 Gene

Genomics for GC01M244942 Gene

GeneHancer (GH) Regulatory Elements for GC01M244942 Gene

Promoters and enhancers for GC01M244942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J244940 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +2.5 2503 2.6 ZNF687 RELA CREM ZNF404 ZNF680 ZNF560 IKZF1 PKNOX1 ZNF221 ZBTB8A HNRNPU CATSPERE COX20 ENSG00000272195 DESI2 GC01M244942 ENSG00000273175
GH01J244918 Enhancer 1.3 FANTOM5 ENCODE 0.3 +24.0 24013 1.3 GTF2F1 ZNF687 SP7 KLF14 CREM PRDM1 ZNF639 EGR1 GLIS2 POLR2A RNU6-947P COX20 ENSG00000272195 EFCAB2 GC01M244942 ENSG00000273175
GH01J244920 Enhancer 0.7 ENCODE 0.3 +22.0 22005 1 CREM ZBED1 IKZF2 EED RUNX3 BCL11A JUNB BCOR CEBPG CEBPB RNU6-947P GC01M244942 ENSG00000273175
GH01J244896 Enhancer 0.8 Ensembl ENCODE 0.3 +46.2 46209 1.2 PRDM1 IKZF1 PHB2 FOXA2 FOS FOSL2 ZNF335 JUN KLF1 DACH1 RNU6-947P ENSG00000273175 GC01M244942
GH01J244868 Enhancer 0.7 ENCODE 0.2 +73.8 73774 0.9 HDGF ELF3 ZNF121 CEBPG CEBPA GATAD2A RCOR2 FOXA2 ZBTB25 SAP130 ENSG00000273175 GC01M244942
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M244942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M244942 Gene

Genomic Locations for GC01M244942 Gene
chr1:244,942,970-244,943,004
(GRCh38/hg38)
Size:
35 bases
Orientation:
Minus strand

Genomic View for GC01M244942 Gene

Genes around GC01M244942 on UCSC Golden Path with GeneCards custom track

GC01M244942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M244942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M244942 Gene

ORGUL Member Location for GC01M244942 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M244942 Gene

Proteins for GC01M244942 Gene

Post-translational modifications for GC01M244942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M244942 Gene

Domains & Families for GC01M244942 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M244942 Gene

Function for GC01M244942 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M244942 Gene

Localization for GC01M244942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M244942 Gene

Pathways & Interactions for GC01M244942 Gene

PathCards logo

SuperPathways for GC01M244942 Gene

No Data Available

Interacting Proteins for GC01M244942 Gene

Gene Ontology (GO) - Biological Process for GC01M244942 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M244942 Gene

Drugs & Compounds for GC01M244942 Gene

No Compound Related Data Available

Transcripts for GC01M244942 Gene

fRNAdb Secondary structures for GC01M244942 Gene

  • FR050780
  • FR385812

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M244942 Gene

No ASD Table

Relevant External Links for GC01M244942 Gene

GeneLoc Exon Structure for
GC01M244942

No data available for mRNA/cDNA for GC01M244942 Gene

Expression for GC01M244942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M244942 Gene

Orthologs for GC01M244942 Gene

No data available for Orthologs and Evolution for GC01M244942 Gene

Paralogs for GC01M244942 Gene

No data available for Paralogs for GC01M244942 Gene

Variants for GC01M244942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M244942 Gene

Disorders for GC01M244942 Gene

No disorders were found for GC01M244942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M244942 Gene

Publications for GC01M244942 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC01M244942 Gene

Products for GC01M244942 Gene

Sources for GC01M244942 Gene

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