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Aliases for GC01M235128 Gene

Subcategory (RNA class) for GC01M235128 Gene

snoRNA

Quality Score for this RNA gene is

22

Aliases for GC01M235128 Gene

No Aliases found

No data available for External Ids for GC01M235128 Gene

Summaries for GC01M235128 Gene

GeneCards Summary for GC01M235128 Gene

GC01M235128 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M235128 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC01M235128

Additional gene information for GC01M235128 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M235128 Gene

Genomics for GC01M235128 Gene

GeneHancer (GH) Regulatory Elements for GC01M235128 Gene

Promoters and enhancers for GC01M235128 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J235126 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 -0.8 -793 5.1 ZNF652 SP1 ZFX ELF3 MNT CBFA2T2 NKRF POLR2A MLLT1 ZNF121 TOMM20 GC01M235128 GC01M235129 LOC105379283 SNORA14B ARID4B RPS21P1 GGPS1 IRF2BP2 LDHAP2
GH01J235125 Promoter 0.7 Ensembl 0.7 +2.8 2836 0.2 ZBTB33 ZNF202 ARID4B RPS21P1 GGPS1 GC01M235128 GC01M235129 TOMM20 SNORA14B GC01P235107
GH01J235122 Enhancer 0.6 Ensembl 0.7 +4.3 4336 1.6 ZNF121 ZBTB33 ZEB2 ELF4 ZSCAN5C TSHZ1 ZNF580 HDGF ZNF213 ZNF202 ARID4B RPS21P1 GGPS1 GC01M235128 GC01M235129 SNORA14B TOMM20 GC01P235107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M235128 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M235128 Gene

Genomic Locations for GC01M235128 Gene
chr1:235,127,802-235,127,937
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC01M235128 Gene

Genes around GC01M235128 on UCSC Golden Path with GeneCards custom track

GC01M235128 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M235128 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M235128 Gene

ORGUL Member Location for GC01M235128 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M235128 Gene

Proteins for GC01M235128 Gene

Post-translational modifications for GC01M235128 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M235128 Gene

Domains & Families for GC01M235128 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M235128 Gene

Function for GC01M235128 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M235128 Gene

Localization for GC01M235128 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M235128 Gene

Pathways & Interactions for GC01M235128 Gene

PathCards logo

SuperPathways for GC01M235128 Gene

No Data Available

Interacting Proteins for GC01M235128 Gene

Gene Ontology (GO) - Biological Process for GC01M235128 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M235128 Gene

Drugs & Compounds for GC01M235128 Gene

No Compound Related Data Available

Transcripts for GC01M235128 Gene

fRNAdb Secondary structures for GC01M235128 Gene

  • FR053474

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M235128 Gene

No ASD Table

Relevant External Links for GC01M235128 Gene

GeneLoc Exon Structure for
GC01M235128

No data available for mRNA/cDNA for GC01M235128 Gene

Expression for GC01M235128 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M235128 Gene

Orthologs for GC01M235128 Gene

No data available for Orthologs and Evolution for GC01M235128 Gene

Paralogs for GC01M235128 Gene

No data available for Paralogs for GC01M235128 Gene

Variants for GC01M235128 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M235128 Gene

Disorders for GC01M235128 Gene

No disorders were found for GC01M235128 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M235128 Gene

Publications for GC01M235128 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

No data available for External Links for GC01M235128 Gene

Products for GC01M235128 Gene

Sources for GC01M235128 Gene

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