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Aliases for GC01M229537 Gene

Subcategory (RNA class) for GC01M229537 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M229537 Gene

No Aliases found

ORGUL Members for GC01M229537 Gene

No data available for External Ids for GC01M229537 Gene

Summaries for GC01M229537 Gene

GeneCards Summary for GC01M229537 Gene

GC01M229537 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M229537 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

Additional gene information for GC01M229537 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M229537 Gene

Genomics for GC01M229537 Gene

GeneHancer (GH) Regulatory Elements for GC01M229537 Gene

Promoters and enhancers for GC01M229537 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J229514 Enhancer 1 Ensembl ENCODE 0.3 +21.1 21116 2.1 ZNF652 CTCF SP7 PRDM1 RAD21 CREB1 ZNF600 REST PKNOX1 POLR2A HMGN2P19 ENSG00000223635 LOC101927478 GC01M229537 RNU4-21P
GH01J229511 Enhancer 0.3 Ensembl 0.3 +23.7 23688 0.2 EGR2 ENSG00000223635 LOC101927478 GC01M229537 RNU4-21P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M229537 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M229537 Gene

Genomic Locations for GC01M229537 Gene
chr1:229,535,072-229,535,189
(GRCh38/hg38)
Size:
118 bases
Orientation:
Minus strand

Genomic View for GC01M229537 Gene

Genes around GC01M229537 on UCSC Golden Path with GeneCards custom track

GC01M229537 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M229537 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M229537 Gene

Proteins for GC01M229537 Gene

Post-translational modifications for GC01M229537 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M229537 Gene

Domains & Families for GC01M229537 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M229537 Gene

Function for GC01M229537 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M229537 Gene

Localization for GC01M229537 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M229537 Gene

Pathways & Interactions for GC01M229537 Gene

PathCards logo

SuperPathways for GC01M229537 Gene

No Data Available

Interacting Proteins for GC01M229537 Gene

Gene Ontology (GO) - Biological Process for GC01M229537 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M229537 Gene

Drugs & Compounds for GC01M229537 Gene

No Compound Related Data Available

Transcripts for GC01M229537 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M229537 Gene

No ASD Table

Relevant External Links for GC01M229537 Gene

GeneLoc Exon Structure for
GC01M229537

No data available for mRNA/cDNA for GC01M229537 Gene

Expression for GC01M229537 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M229537 Gene

Orthologs for GC01M229537 Gene

No data available for Orthologs and Evolution for GC01M229537 Gene

Paralogs for GC01M229537 Gene

No data available for Paralogs for GC01M229537 Gene

Variants for GC01M229537 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M229537 Gene

Disorders for GC01M229537 Gene

No disorders were found for GC01M229537 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M229537 Gene

Publications for GC01M229537 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01M229537 Gene

Products for GC01M229537 Gene

Sources for GC01M229537 Gene

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