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Aliases for GC01M222258 Gene

Subcategory (RNA class) for GC01M222258 Gene

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Quality Score for this RNA gene is

15

Aliases for GC01M222258 Gene

No Aliases found

ORGUL Members for GC01M222258 Gene

No data available for External Ids for GC01M222258 Gene

Summaries for GC01M222258 Gene

GeneCards Summary for GC01M222258 Gene

GC01M222258 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC01M222258 Gene - the ORGUL cluster for this gene includes several descriptions:

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

  • Potassium channel RNA editing signal: This family represents a group of sequences related to the human potassium channel Kv1.1 hairpin element which directs the efficient modification of an adenosine to inosine by an adenosine deaminase acting on RNA (ADAR). The ADAR modification causes an isoleucine/valine recoding event which lies in the ion-conducting pore of the potassium channel. It is thought that this editing event targets the process of fast inactivation and allows a more rapid recovery from inactivation at negative potentials [1].

View fRNAdb secondary structures for GC01M222258

Additional gene information for GC01M222258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M222258 Gene

Genomics for GC01M222258 Gene

GeneHancer (GH) Regulatory Elements for GC01M222258 Gene

Promoters and enhancers for GC01M222258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J222240 Enhancer 1 Ensembl ENCODE 0.4 +16.4 16378 4.4 ZFX CBFA2T2 BACH1 MAFK TRIM24 SMARCA4 DPF2 IKZF1 ZIC2 ZNF24 GC01M222232 ENSG00000272750 GC01M222258 GC01M222259 ENSG00000236230
GH01J222252 Enhancer 0.3 Ensembl 0.4 +6.1 6141 1.2 PKNOX1 GC01M222258 GC01M222259 GC01M222232 ENSG00000236230
GH01J222247 Enhancer 0.3 Ensembl 0.4 +11.0 11041 1.4 ZNF621 ENSG00000272750 GC01M222232 GC01M222258 GC01M222259 ENSG00000236230
GH01J222250 Enhancer 0.2 Ensembl 0.4 +8.0 8002 0.9 GC01M222232 GC01M222258 GC01M222259 ENSG00000236230
GH01J222245 Enhancer 0.2 Ensembl 0.4 +12.9 12941 0.8 GC01M222232 GC01M222258 GC01M222259 ENSG00000236230
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M222258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M222258 Gene

Genomic Locations for GC01M222258 Gene
chr1:222,258,628-222,258,742
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand

Genomic View for GC01M222258 Gene

Genes around GC01M222258 on UCSC Golden Path with GeneCards custom track

GC01M222258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M222258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M222258 Gene

ORGUL Member Location for GC01M222258 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M222258 Gene

Proteins for GC01M222258 Gene

Post-translational modifications for GC01M222258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M222258 Gene

Domains & Families for GC01M222258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M222258 Gene

Function for GC01M222258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M222258 Gene

Localization for GC01M222258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M222258 Gene

Pathways & Interactions for GC01M222258 Gene

PathCards logo

SuperPathways for GC01M222258 Gene

No Data Available

Interacting Proteins for GC01M222258 Gene

Gene Ontology (GO) - Biological Process for GC01M222258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M222258 Gene

Drugs & Compounds for GC01M222258 Gene

No Compound Related Data Available

Transcripts for GC01M222258 Gene

fRNAdb Secondary structures for GC01M222258 Gene

  • FR185906

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M222258 Gene

No ASD Table

Relevant External Links for GC01M222258 Gene

GeneLoc Exon Structure for
GC01M222258

No data available for mRNA/cDNA for GC01M222258 Gene

Expression for GC01M222258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M222258 Gene

Orthologs for GC01M222258 Gene

No data available for Orthologs and Evolution for GC01M222258 Gene

Paralogs for GC01M222258 Gene

No data available for Paralogs for GC01M222258 Gene

Variants for GC01M222258 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M222258 Gene

Disorders for GC01M222258 Gene

No disorders were found for GC01M222258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M222258 Gene

Publications for GC01M222258 Gene

  1. Control of human potassium channel inactivation by editing of a small mRNA hairpin. (PMID: 15361858) Bhalla T … Reenan R (Nature structural & molecular biology 2004) 1

No data available for External Links for GC01M222258 Gene

Products for GC01M222258 Gene

Sources for GC01M222258 Gene

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