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Aliases for GC01M220094 Gene

Subcategory (RNA class) for GC01M220094 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M220094 Gene

No Aliases found

ORGUL Members for GC01M220094 Gene

No data available for External Ids for GC01M220094 Gene

Summaries for GC01M220094 Gene

GeneCards Summary for GC01M220094 Gene

GC01M220094 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M220094 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

View fRNAdb secondary structures for GC01M220094

Additional gene information for GC01M220094 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M220094 Gene

Genomics for GC01M220094 Gene

GeneHancer (GH) Regulatory Elements for GC01M220094 Gene

Promoters and enhancers for GC01M220094 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J220092 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.8 790 2.6 SP1 ZFX ZNF148 NKRF MLLT1 POLR2A GTF2F1 TFE3 TRIM24 SP5 GC01M220094 IARS2 EPRS
GH01J220096 Enhancer 0.3 Ensembl 600.7 -1.9 -1926 0.4 ZBTB33 GC01M220094 RAB3GAP2 IARS2 GC01P220104
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M220094 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M220094 Gene

Genomic Locations for GC01M220094 Gene
chr1:220,094,966-220,095,075
(GRCh38/hg38)
Size:
110 bases
Orientation:
Minus strand

Genomic View for GC01M220094 Gene

Genes around GC01M220094 on UCSC Golden Path with GeneCards custom track

GC01M220094 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M220094 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M220094 Gene

ORGUL Member Location for GC01M220094 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M220094 Gene

Proteins for GC01M220094 Gene

Post-translational modifications for GC01M220094 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M220094 Gene

Domains & Families for GC01M220094 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M220094 Gene

Function for GC01M220094 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M220094 Gene

Localization for GC01M220094 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M220094 Gene

Pathways & Interactions for GC01M220094 Gene

PathCards logo

SuperPathways for GC01M220094 Gene

No Data Available

Interacting Proteins for GC01M220094 Gene

Gene Ontology (GO) - Biological Process for GC01M220094 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M220094 Gene

Drugs & Compounds for GC01M220094 Gene

No Compound Related Data Available

Transcripts for GC01M220094 Gene

fRNAdb Secondary structures for GC01M220094 Gene

  • FR171460
  • FR346296

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M220094 Gene

No ASD Table

Relevant External Links for GC01M220094 Gene

GeneLoc Exon Structure for
GC01M220094

No data available for mRNA/cDNA for GC01M220094 Gene

Expression for GC01M220094 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M220094 Gene

Orthologs for GC01M220094 Gene

No data available for Orthologs and Evolution for GC01M220094 Gene

Paralogs for GC01M220094 Gene

No data available for Paralogs for GC01M220094 Gene

Variants for GC01M220094 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M220094 Gene

Disorders for GC01M220094 Gene

No disorders were found for GC01M220094 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M220094 Gene

Publications for GC01M220094 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01M220094 Gene

Products for GC01M220094 Gene

Sources for GC01M220094 Gene

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