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Aliases for GC01M218542 Gene

Subcategory (RNA class) for GC01M218542 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC01M218542 Gene

No Aliases found

ORGUL Members for GC01M218542 Gene

No data available for External Ids for GC01M218542 Gene

Summaries for GC01M218542 Gene

GeneCards Summary for GC01M218542 Gene

GC01M218542 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M218542 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

Additional gene information for GC01M218542 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M218542 Gene

Genomics for GC01M218542 Gene

GeneHancer (GH) Regulatory Elements for GC01M218542 Gene

Promoters and enhancers for GC01M218542 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J218537 Enhancer 0.7 Ensembl ENCODE 0.7 +4.5 4499 2.4 CEBPB JUN JUND EP300 RFX5 FOSL2 SREBF1 TGFB2 C1orf143 TGFB2-AS1 ENSG00000212610 GC01M218542
GH01J218529 Enhancer 0.7 Ensembl ENCODE 0.4 +12.1 12062 1.3 ZBTB44 STAT1 JUND MAFF TGFB2 TGFB2-AS1 GC01M218542 ENSG00000212610 C1orf143
GH01J218521 Enhancer 0.6 Ensembl 0.3 +20.1 20098 0.4 CTCF RAD21 GATAD2B REST GTF2F1 SMARCA5 SMC3 GATA3 ZNF654 ZNF143 TGFB2 TGFB2-AS1 C1orf143 ENSG00000212610 GC01M218542
GH01J218524 Enhancer 0.4 Ensembl 0.4 +16.7 16699 1.2 ZNF384 RNF2 TGFB2 TGFB2-AS1 C1orf143 ENSG00000212610 GC01M218542
GH01J218517 Enhancer 0.3 Ensembl 0.3 +24.0 23998 0.2 RCOR1 TGFB2 TGFB2-AS1 C1orf143 ENSG00000212610 GC01M218542
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M218542 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M218542 Gene

Genomic Locations for GC01M218542 Gene
chr1:218,541,690-218,541,899
(GRCh38/hg38)
Size:
210 bases
Orientation:
Minus strand

Genomic View for GC01M218542 Gene

Genes around GC01M218542 on UCSC Golden Path with GeneCards custom track

GC01M218542 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M218542 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M218542 Gene

Proteins for GC01M218542 Gene

Post-translational modifications for GC01M218542 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M218542 Gene

Domains & Families for GC01M218542 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M218542 Gene

Function for GC01M218542 Gene

Phenotypes From GWAS Catalog for GC01M218542 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M218542 Gene

Localization for GC01M218542 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M218542 Gene

Pathways & Interactions for GC01M218542 Gene

PathCards logo

SuperPathways for GC01M218542 Gene

No Data Available

Interacting Proteins for GC01M218542 Gene

Gene Ontology (GO) - Biological Process for GC01M218542 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M218542 Gene

Drugs & Compounds for GC01M218542 Gene

No Compound Related Data Available

Transcripts for GC01M218542 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M218542 Gene

No ASD Table

Relevant External Links for GC01M218542 Gene

GeneLoc Exon Structure for
GC01M218542

No data available for mRNA/cDNA for GC01M218542 Gene

Expression for GC01M218542 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M218542 Gene

Orthologs for GC01M218542 Gene

No data available for Orthologs and Evolution for GC01M218542 Gene

Paralogs for GC01M218542 Gene

No data available for Paralogs for GC01M218542 Gene

Variants for GC01M218542 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M218542 Gene

Disorders for GC01M218542 Gene

No disorders were found for GC01M218542 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M218542 Gene

Publications for GC01M218542 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

No data available for External Links for GC01M218542 Gene

Products for GC01M218542 Gene

Sources for GC01M218542 Gene

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