Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC01M210375 Gene

Subcategory (RNA class) for GC01M210375 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M210375 Gene

No Aliases found

ORGUL Members for GC01M210375 Gene

No data available for External Ids for GC01M210375 Gene

Summaries for GC01M210375 Gene

GeneCards Summary for GC01M210375 Gene

GC01M210375 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M210375 Gene

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

Additional gene information for GC01M210375 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M210375 Gene

Genomics for GC01M210375 Gene

GeneHancer (GH) Regulatory Elements for GC01M210375 Gene

Promoters and enhancers for GC01M210375 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J210371 Enhancer 1.3 Ensembl ENCODE 600.7 +0.7 666 3.6 ZNF652 SP1 ELF3 CTCF POLR2A CEBPG GTF2F1 CSDE1 ZNF384 ZNF687 GC01M210375 RNU5A-8P RCOR3 SERTAD4-AS1 SERTAD4 ST13P19 HHAT PIR50724
GH01J210369 Promoter/Enhancer 0.9 EPDnew Ensembl 0.7 +4.8 4766 0.6 ZIC2 USF1 ZNF664 HHAT SERTAD4 SERTAD4-AS1 GC01M210375 PIR50724 RNU5A-8P
GH01J210376 Enhancer 0.7 Ensembl ENCODE 0.7 -3.8 -3814 3.2 POLR2A PKNOX1 GATA3 JUND PRDM6 HHAT GC01M210375 RNU5A-8P LOC100421537
GH01J210392 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -20.0 -20002 2.7 SP1 NKRF ZNF687 MLLT1 ZNF644 KAT8 IKZF1 POLR2A PRDM10 BACH1 SERTAD4-AS1 SERTAD4 HHAT SYT14 GC01M210375 RNU5A-8P LOC100421537
GH01J210366 Enhancer 0.9 Ensembl ENCODE 0.4 +7.0 6967 1.8 ELF3 PRDM1 ZNF644 GATAD2A CTBP1 SOX13 FOXA2 SAP130 TEAD1 ZNF217 PIR50724 SERTAD4-AS1 SERTAD4 HHAT GC01M210375 RNU5A-8P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M210375 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M210375 Gene

Genomic Locations for GC01M210375 Gene
chr1:210,374,153-210,374,267
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand

Genomic View for GC01M210375 Gene

Genes around GC01M210375 on UCSC Golden Path with GeneCards custom track

GC01M210375 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M210375 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M210375 Gene

Proteins for GC01M210375 Gene

Post-translational modifications for GC01M210375 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M210375 Gene

Domains & Families for GC01M210375 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M210375 Gene

Function for GC01M210375 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M210375 Gene

Localization for GC01M210375 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M210375 Gene

Pathways & Interactions for GC01M210375 Gene

PathCards logo

SuperPathways for GC01M210375 Gene

No Data Available

Interacting Proteins for GC01M210375 Gene

Gene Ontology (GO) - Biological Process for GC01M210375 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M210375 Gene

Drugs & Compounds for GC01M210375 Gene

No Compound Related Data Available

Transcripts for GC01M210375 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M210375 Gene

No ASD Table

Relevant External Links for GC01M210375 Gene

GeneLoc Exon Structure for
GC01M210375

No data available for mRNA/cDNA for GC01M210375 Gene

Expression for GC01M210375 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M210375 Gene

Orthologs for GC01M210375 Gene

No data available for Orthologs and Evolution for GC01M210375 Gene

Paralogs for GC01M210375 Gene

No data available for Paralogs for GC01M210375 Gene

Variants for GC01M210375 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M210375 Gene

Disorders for GC01M210375 Gene

No disorders were found for GC01M210375 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M210375 Gene

Publications for GC01M210375 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01M210375 Gene

Products for GC01M210375 Gene

Sources for GC01M210375 Gene

Content
Loading form....