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Aliases for GC01M207811 Gene

Subcategory (RNA class) for GC01M207811 Gene

miRNA

Quality Score for this RNA gene is

20.2

Aliases for GC01M207811 Gene

No Aliases found

No data available for External Ids for GC01M207811 Gene

Summaries for GC01M207811 Gene

GeneCards Summary for GC01M207811 Gene

GC01M207811 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC01M207811 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC01M207811

Additional gene information for GC01M207811 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M207811 Gene

Genomics for GC01M207811 Gene

GeneHancer (GH) Regulatory Elements for GC01M207811 Gene

Promoters and enhancers for GC01M207811 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J207800 Enhancer 0.3 Ensembl 600.7 +1.4 1424 0.2 POLR2A GC01M207811 MIR29C CDCA4P4 MIR29B2CHG
GH01J207796 Enhancer 1 Ensembl ENCODE 0.7 +3.3 3335 3.2 CC2D1A CTCF ZNF384 RAD21 SMARCA4 FOSL2 CREB1 REST PKNOX1 TRIM22 CD46 CR1L GC01M207811 CDCA4P4 MIR29B2CHG
GH01J207789 Enhancer 0.8 Ensembl ENCODE 0.4 +11.3 11304 2.6 PRDM1 ATF7 CTBP1 ATF2 DPF2 GATA3 TCF7L2 SMARCE1 HLF CR1L GC01M207811 CDCA4P4 CD46 MIR29B2CHG
GH01J207778 Enhancer 0.8 Ensembl 0.3 +22.8 22824 0.6 CC2D1A ZKSCAN8 CBFA2T2 SMARCA4 MTA1 GMEB1 DPF2 IKZF1 LEF1 HDAC1 MIR29C MIR29B2CHG CDCA4P4 GC01M207811 CD46
GH01J207780 Enhancer 0.4 Ensembl 0.3 +20.6 20624 1 PKNOX1 MEF2D CBFA2T3 MIR29C MIR29B2CHG CDCA4P4 GC01M207811 CD46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M207811 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M207811 Gene

Genomic Locations for GC01M207811 Gene
chr1:207,801,863-207,801,925
(GRCh38/hg38)
Size:
63 bases
Orientation:
Minus strand

Genomic View for GC01M207811 Gene

Genes around GC01M207811 on UCSC Golden Path with GeneCards custom track

GC01M207811 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M207811 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M207811 Gene

ORGUL Member Location for GC01M207811 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M207811 Gene

Proteins for GC01M207811 Gene

Post-translational modifications for GC01M207811 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M207811 Gene

Domains & Families for GC01M207811 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M207811 Gene

Function for GC01M207811 Gene

Phenotypes From GWAS Catalog for GC01M207811 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M207811 Gene

Localization for GC01M207811 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M207811 Gene

Pathways & Interactions for GC01M207811 Gene

PathCards logo

SuperPathways for GC01M207811 Gene

No Data Available

Interacting Proteins for GC01M207811 Gene

Gene Ontology (GO) - Biological Process for GC01M207811 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M207811 Gene

Drugs & Compounds for GC01M207811 Gene

No Compound Related Data Available

Transcripts for GC01M207811 Gene

fRNAdb Secondary structures for GC01M207811 Gene

  • FR390016
  • FR185304

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M207811 Gene

No ASD Table

Relevant External Links for GC01M207811 Gene

GeneLoc Exon Structure for
GC01M207811

No data available for mRNA/cDNA for GC01M207811 Gene

Expression for GC01M207811 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M207811 Gene

Orthologs for GC01M207811 Gene

No data available for Orthologs and Evolution for GC01M207811 Gene

Paralogs for GC01M207811 Gene

No data available for Paralogs for GC01M207811 Gene

Variants for GC01M207811 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M207811 Gene

Disorders for GC01M207811 Gene

No disorders were found for GC01M207811 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M207811 Gene

Publications for GC01M207811 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. microRNAs: tiny regulators with great potential. (PMID: 11779458) Ambros V (Cell 2001) 1

No data available for External Links for GC01M207811 Gene

Products for GC01M207811 Gene

Sources for GC01M207811 Gene

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