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Aliases for GC01M202530 Gene

Subcategory (RNA class) for GC01M202530 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC01M202530 Gene

No Aliases found

ORGUL Members for GC01M202530 Gene

No data available for External Ids for GC01M202530 Gene

Summaries for GC01M202530 Gene

GeneCards Summary for GC01M202530 Gene

GC01M202530 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M202530 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC01M202530 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M202530 Gene

Genomics for GC01M202530 Gene

GeneHancer (GH) Regulatory Elements for GC01M202530 Gene

Promoters and enhancers for GC01M202530 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J202525 Enhancer 0.2 Ensembl 600.7 +1.1 1138 1.8 ENSG00000253042 GC01M202530 RPS27P8 PPP1R12B
GH01J202528 Enhancer 0.2 Ensembl 600.7 -0.8 -762 0.4 ENSG00000253042 GC01M202530 GC01P202549 PPP1R12B
GH01J202531 Enhancer 1.1 Ensembl ENCODE 0.7 -4.8 -4762 5.2 SIX5 CBFA2T2 CSDE1 ZNF687 NCOA3 NCOA6 TRIM24 EGR1 ZNF639 SMARCA4 ELF3-AS1 LGR6 GC01M202530 GC01P202549 PPP1R12B
GH01J202538 Promoter/Enhancer 0.9 Ensembl ENCODE 0.4 -14.3 -14337 6.5 PRDM1 MZF1 PRDM10 LGR6 ENSG00000226862 PTPRVP GC01P202549 GC01M202530 PPP1R12B
GH01J202547 Enhancer 0.6 ENCODE 0.4 -19.5 -19519 0 MLLT1 SMARCA4 MTA1 IKZF1 IKZF2 LEF1 ZNF766 RUNX3 NBN CREM GC01P202549 GC01M202530 PPP1R12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M202530 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M202530 Gene

Genomic Locations for GC01M202530 Gene
chr1:202,527,309-202,527,439
(GRCh38/hg38)
Size:
131 bases
Orientation:
Minus strand

Genomic View for GC01M202530 Gene

Genes around GC01M202530 on UCSC Golden Path with GeneCards custom track

GC01M202530 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M202530 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M202530 Gene

Proteins for GC01M202530 Gene

Post-translational modifications for GC01M202530 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M202530 Gene

Domains & Families for GC01M202530 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M202530 Gene

Function for GC01M202530 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M202530 Gene

Localization for GC01M202530 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M202530 Gene

Pathways & Interactions for GC01M202530 Gene

PathCards logo

SuperPathways for GC01M202530 Gene

No Data Available

Interacting Proteins for GC01M202530 Gene

Gene Ontology (GO) - Biological Process for GC01M202530 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M202530 Gene

Drugs & Compounds for GC01M202530 Gene

No Compound Related Data Available

Transcripts for GC01M202530 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M202530 Gene

No ASD Table

Relevant External Links for GC01M202530 Gene

GeneLoc Exon Structure for
GC01M202530

No data available for mRNA/cDNA for GC01M202530 Gene

Expression for GC01M202530 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M202530 Gene

Orthologs for GC01M202530 Gene

No data available for Orthologs and Evolution for GC01M202530 Gene

Paralogs for GC01M202530 Gene

No data available for Paralogs for GC01M202530 Gene

Variants for GC01M202530 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M202530 Gene

Disorders for GC01M202530 Gene

No disorders were found for GC01M202530 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M202530 Gene

Publications for GC01M202530 Gene

  1. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  2. Pseudouridine in RNA: what, where, how, and why. (PMID: 10902565) Charette M … Gray MW (IUBMB life 2000) 1

No data available for External Links for GC01M202530 Gene

Products for GC01M202530 Gene

Sources for GC01M202530 Gene

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