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Aliases for GC01M202411 Gene

Subcategory (RNA class) for GC01M202411 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M202411 Gene

No Aliases found

ORGUL Members for GC01M202411 Gene

No data available for External Ids for GC01M202411 Gene

Summaries for GC01M202411 Gene

GeneCards Summary for GC01M202411 Gene

GC01M202411 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M202411 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC01M202411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M202411 Gene

Genomics for GC01M202411 Gene

GeneHancer (GH) Regulatory Elements for GC01M202411 Gene

Promoters and enhancers for GC01M202411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J202409 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 -1.0 -1015 2.6 EGR1 RFX1 CTBP1 PKNOX1 DPF2 PRDM4 ZFHX2 GATA3 FOS SMARCE1 GC01M202411 RNU6-89P LOC100420423 PPP1R12B
GH01J202407 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +3.1 3142 2.3 PRDM1 ZIC2 POLR2A ZBTB17 JUND FOS GC01M202411 RNU6-89P CYCSP4 PPP1R12B
GH01J202379 Enhancer 0.9 ENCODE 0.3 +29.9 29913 1.6 MTA3 NCOA3 SP7 ZNF174 MZF1 CREB1 ZBTB33 ZNF600 PRDM10 TARDBP IPO9-AS1 IPO9 CYCSP4 RNU6-89P GC01M202411 PPP1R12B
GH01J202401 Enhancer 0.6 Ensembl dbSUPER 0.4 +7.4 7406 2.8 PRDM1 ZNF362 GC01M202411 RNU6-89P CYCSP4 PPP1R12B
GH01J202419 Enhancer 0.6 Ensembl dbSUPER 0.4 -9.8 -9794 1.6 PRDM1 NFE2 GC01M202411 RNU6-89P LOC100420423 PPP1R12B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M202411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M202411 Gene

Genomic Locations for GC01M202411 Gene
chr1:202,410,107-202,410,207
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand

Genomic View for GC01M202411 Gene

Genes around GC01M202411 on UCSC Golden Path with GeneCards custom track

GC01M202411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M202411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M202411 Gene

Proteins for GC01M202411 Gene

Post-translational modifications for GC01M202411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M202411 Gene

Domains & Families for GC01M202411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M202411 Gene

Function for GC01M202411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M202411 Gene

Localization for GC01M202411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M202411 Gene

Pathways & Interactions for GC01M202411 Gene

PathCards logo

SuperPathways for GC01M202411 Gene

No Data Available

Interacting Proteins for GC01M202411 Gene

Gene Ontology (GO) - Biological Process for GC01M202411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M202411 Gene

Drugs & Compounds for GC01M202411 Gene

No Compound Related Data Available

Transcripts for GC01M202411 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M202411 Gene

No ASD Table

Relevant External Links for GC01M202411 Gene

GeneLoc Exon Structure for
GC01M202411

No data available for mRNA/cDNA for GC01M202411 Gene

Expression for GC01M202411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M202411 Gene

Orthologs for GC01M202411 Gene

No data available for Orthologs and Evolution for GC01M202411 Gene

Paralogs for GC01M202411 Gene

No data available for Paralogs for GC01M202411 Gene

Variants for GC01M202411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M202411 Gene

Disorders for GC01M202411 Gene

No disorders were found for GC01M202411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M202411 Gene

Publications for GC01M202411 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01M202411 Gene

Products for GC01M202411 Gene

Sources for GC01M202411 Gene

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