Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC01M197685 Gene

Subcategory (RNA class) for GC01M197685 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC01M197685 Gene

No Aliases found

ORGUL Members for GC01M197685 Gene

No data available for External Ids for GC01M197685 Gene

Summaries for GC01M197685 Gene

GeneCards Summary for GC01M197685 Gene

GC01M197685 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC01M197685 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC01M197685 Gene

Genomics for GC01M197685 Gene

GeneHancer (GH) Regulatory Elements for GC01M197685 Gene

Promoters and enhancers for GC01M197685 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J197686 Enhancer 0.6 Ensembl 600.7 -0.8 -761 1 RXRA SCRT2 SCRT1 EP300 YY1 ZNF18 HNF4A GLIS1 PRDM6 ENSG00000207139 GC01M197685 DENND1B C1orf53 LHX9 EEF1A1P32
GH01J197687 Enhancer 0.2 Ensembl 600.7 -1.6 -1561 0.2 ENSG00000207139 EEF1A1P32 GC01M197685 C1orf53 DENND1B
GH01J197681 Enhancer 0.8 Ensembl 0.7 +2.6 2639 3 SP7 KLF14 CEBPG POLR2A PKNOX1 ZEB2 ZNF629 ZNF692 TCF7L2 ZNF501 DENND1B C1orf53 LHX9 ENSG00000207139 GC01M197685 ENSG00000230260
GH01J197675 Enhancer 0.8 ENCODE 0.4 +9.9 9858 0.4 ZNF148 TRIM24 PRDM1 ZNF384 SMARCA4 ZNF547 POLR2A SOX6 MGA OSR2 DENND1B GC01M197685 ENSG00000207139 ENSG00000230260
GH01J197674 Enhancer 0.8 UCNEbase Ensembl 0.4 +11.4 11439 1 OSR2 POLR2A PRDM6 DENND1B C1orf53 LHX9 GC01M197685 ENSG00000207139 ENSG00000230260
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M197685 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M197685 Gene

Genomic Locations for GC01M197685 Gene
chr1:197,685,641-197,685,740
(GRCh38/hg38)
Size:
100 bases
Orientation:
Minus strand

Genomic View for GC01M197685 Gene

Genes around GC01M197685 on UCSC Golden Path with GeneCards custom track

GC01M197685 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M197685 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M197685 Gene

Proteins for GC01M197685 Gene

Post-translational modifications for GC01M197685 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M197685 Gene

Domains & Families for GC01M197685 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M197685 Gene

Function for GC01M197685 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M197685 Gene

Localization for GC01M197685 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M197685 Gene

Pathways & Interactions for GC01M197685 Gene

PathCards logo

SuperPathways for GC01M197685 Gene

No Data Available

Interacting Proteins for GC01M197685 Gene

Gene Ontology (GO) - Biological Process for GC01M197685 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M197685 Gene

Drugs & Compounds for GC01M197685 Gene

No Compound Related Data Available

Transcripts for GC01M197685 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M197685 Gene

No ASD Table

Relevant External Links for GC01M197685 Gene

GeneLoc Exon Structure for
GC01M197685

No data available for mRNA/cDNA for GC01M197685 Gene

Expression for GC01M197685 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M197685 Gene

Orthologs for GC01M197685 Gene

No data available for Orthologs and Evolution for GC01M197685 Gene

Paralogs for GC01M197685 Gene

No data available for Paralogs for GC01M197685 Gene

Variants for GC01M197685 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M197685 Gene

Disorders for GC01M197685 Gene

No disorders were found for GC01M197685 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M197685 Gene

Publications for GC01M197685 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

No data available for External Links for GC01M197685 Gene

Products for GC01M197685 Gene

Sources for GC01M197685 Gene

Content
Loading form....