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Aliases for GC01M174081 Gene

Subcategory (RNA class) for GC01M174081 Gene

snoRNA

Quality Score for this RNA gene is

20

Aliases for GC01M174081 Gene

No Aliases found

No data available for External Ids for GC01M174081 Gene

Summaries for GC01M174081 Gene

GeneCards Summary for GC01M174081 Gene

GC01M174081 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M174081 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC01M174081

Additional gene information for GC01M174081 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M174081 Gene

Genomics for GC01M174081 Gene

GeneHancer (GH) Regulatory Elements for GC01M174081 Gene

Promoters and enhancers for GC01M174081 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.7 -2.3 -2315 10.3 MTA3 ZFX SP1 ELF3 CBFA2T2 ZNF148 NKRF POLR2A MLLT1 GTF2F1 CENPL ZBTB37 GC01M174067 GC01M174080 GC01M174082 GC01M174083 GC01M174085 GC01M174086 GC01M174087 GC01M174091
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M174081 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M174081 Gene

Genomic Locations for GC01M174081 Gene
chr1:173,864,368-173,864,445
(GRCh38/hg38)
Size:
78 bases
Orientation:
Minus strand

Genomic View for GC01M174081 Gene

Genes around GC01M174081 on UCSC Golden Path with GeneCards custom track

GC01M174081 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M174081 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M174081 Gene

ORGUL Member Location for GC01M174081 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M174081 Gene

Proteins for GC01M174081 Gene

Post-translational modifications for GC01M174081 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M174081 Gene

Domains & Families for GC01M174081 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M174081 Gene

Function for GC01M174081 Gene

Phenotypes From GWAS Catalog for GC01M174081 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M174081 Gene

Localization for GC01M174081 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M174081 Gene

Pathways & Interactions for GC01M174081 Gene

PathCards logo

SuperPathways for GC01M174081 Gene

No Data Available

Interacting Proteins for GC01M174081 Gene

Gene Ontology (GO) - Biological Process for GC01M174081 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M174081 Gene

Drugs & Compounds for GC01M174081 Gene

No Compound Related Data Available

Transcripts for GC01M174081 Gene

fRNAdb Secondary structures for GC01M174081 Gene

  • FR073981

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M174081 Gene

No ASD Table

Relevant External Links for GC01M174081 Gene

GeneLoc Exon Structure for
GC01M174081

No data available for mRNA/cDNA for GC01M174081 Gene

Expression for GC01M174081 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M174081 Gene

Orthologs for GC01M174081 Gene

No data available for Orthologs and Evolution for GC01M174081 Gene

Paralogs for GC01M174081 Gene

No data available for Paralogs for GC01M174081 Gene

Variants for GC01M174081 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M174081 Gene

Disorders for GC01M174081 Gene

No disorders were found for GC01M174081 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M174081 Gene

Publications for GC01M174081 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1
  4. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  5. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

No data available for External Links for GC01M174081 Gene

Products for GC01M174081 Gene

Sources for GC01M174081 Gene

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