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Aliases for GC01M159852 Gene

Subcategory (RNA class) for GC01M159852 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC01M159852 Gene

No Aliases found

ORGUL Members for GC01M159852 Gene

No data available for External Ids for GC01M159852 Gene

Summaries for GC01M159852 Gene

GeneCards Summary for GC01M159852 Gene

GC01M159852 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M159852 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC01M159852 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M159852 Gene

Genomics for GC01M159852 Gene

GeneHancer (GH) Regulatory Elements for GC01M159852 Gene

Promoters and enhancers for GC01M159852 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J159853 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.7 -2.5 -2524 2.9 ZSCAN21 SP7 KLF14 GLIS2 ZBTB8A ZNF600 PRDM10 ZIC2 ATF1 POLR2A ENSG00000272668 SNHG28 VSIG8 ENSG00000212161 GC01M159852 ENSG00000256029
GH01J159848 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.4 2445 1.9 FOS CEBPB ENSG00000272668 SLAMF9 SLAMF8 TAGLN2 ENSG00000212161 GC01M159841 GC01M159852 SNHG28 ENSG00000256029
GH01J159845 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +5.7 5665 2.6 CEBPG CEBPA MNT CEBPB GC01M159841 SNHG28 SLAMF8 GC01M159852 ENSG00000212161 ENSG00000256029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M159852 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M159852 Gene

Genomic Locations for GC01M159852 Gene
chr1:159,851,905-159,851,972
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand

Genomic View for GC01M159852 Gene

Genes around GC01M159852 on UCSC Golden Path with GeneCards custom track

GC01M159852 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M159852 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M159852 Gene

Proteins for GC01M159852 Gene

Post-translational modifications for GC01M159852 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M159852 Gene

Domains & Families for GC01M159852 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M159852 Gene

Function for GC01M159852 Gene

Phenotypes From GWAS Catalog for GC01M159852 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M159852 Gene

Localization for GC01M159852 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M159852 Gene

Pathways & Interactions for GC01M159852 Gene

PathCards logo

SuperPathways for GC01M159852 Gene

No Data Available

Interacting Proteins for GC01M159852 Gene

Gene Ontology (GO) - Biological Process for GC01M159852 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M159852 Gene

Drugs & Compounds for GC01M159852 Gene

No Compound Related Data Available

Transcripts for GC01M159852 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M159852 Gene

No ASD Table

Relevant External Links for GC01M159852 Gene

GeneLoc Exon Structure for
GC01M159852

No data available for mRNA/cDNA for GC01M159852 Gene

Expression for GC01M159852 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M159852 Gene

Orthologs for GC01M159852 Gene

No data available for Orthologs and Evolution for GC01M159852 Gene

Paralogs for GC01M159852 Gene

No data available for Paralogs for GC01M159852 Gene

Variants for GC01M159852 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M159852 Gene

Disorders for GC01M159852 Gene

No disorders were found for GC01M159852 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M159852 Gene

Publications for GC01M159852 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 1
  3. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 1

No data available for External Links for GC01M159852 Gene

Products for GC01M159852 Gene

Sources for GC01M159852 Gene

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