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Aliases for GC01M089909 Gene

Subcategory (RNA class) for GC01M089909 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M089909 Gene

No Aliases found

ORGUL Members for GC01M089909 Gene

No data available for External Ids for GC01M089909 Gene

Summaries for GC01M089909 Gene

GeneCards Summary for GC01M089909 Gene

GC01M089909 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M089909 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

  • U5 spliceosomal RNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

View fRNAdb secondary structures for GC01M089909

Additional gene information for GC01M089909 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M089909 Gene

Genomics for GC01M089909 Gene

GeneHancer (GH) Regulatory Elements for GC01M089909 Gene

Promoters and enhancers for GC01M089909 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M089909 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M089909 Gene

Genomic Locations for GC01M089909 Gene
chr1:89,909,355-89,909,472
(GRCh38/hg38)
Size:
118 bases
Orientation:
Minus strand

Genomic View for GC01M089909 Gene

Genes around GC01M089909 on UCSC Golden Path with GeneCards custom track

GC01M089909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M089909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M089909 Gene

ORGUL Member Location for GC01M089909 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M089909 Gene

Proteins for GC01M089909 Gene

Post-translational modifications for GC01M089909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M089909 Gene

Domains & Families for GC01M089909 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M089909 Gene

Function for GC01M089909 Gene

Phenotypes From GWAS Catalog for GC01M089909 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M089909 Gene

Localization for GC01M089909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M089909 Gene

Pathways & Interactions for GC01M089909 Gene

PathCards logo

SuperPathways for GC01M089909 Gene

No Data Available

Interacting Proteins for GC01M089909 Gene

Gene Ontology (GO) - Biological Process for GC01M089909 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M089909 Gene

Drugs & Compounds for GC01M089909 Gene

No Compound Related Data Available

Transcripts for GC01M089909 Gene

fRNAdb Secondary structures for GC01M089909 Gene

  • FR013145

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M089909 Gene

No ASD Table

Relevant External Links for GC01M089909 Gene

GeneLoc Exon Structure for
GC01M089909

No data available for mRNA/cDNA for GC01M089909 Gene

Expression for GC01M089909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M089909 Gene

Orthologs for GC01M089909 Gene

No data available for Orthologs and Evolution for GC01M089909 Gene

Paralogs for GC01M089909 Gene

No data available for Paralogs for GC01M089909 Gene

Variants for GC01M089909 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M089909 Gene

Disorders for GC01M089909 Gene

No disorders were found for GC01M089909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M089909 Gene

Publications for GC01M089909 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC01M089909 Gene

Products for GC01M089909 Gene

Sources for GC01M089909 Gene

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