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Aliases for GC01M087454 Gene

Subcategory (RNA class) for GC01M087454 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC01M087454 Gene

No Aliases found

ORGUL Members for GC01M087454 Gene

No data available for External Ids for GC01M087454 Gene

Summaries for GC01M087454 Gene

GeneCards Summary for GC01M087454 Gene

GC01M087454 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC01M087454 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC01M087454 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M087454 Gene

Genomics for GC01M087454 Gene

GeneHancer (GH) Regulatory Elements for GC01M087454 Gene

Promoters and enhancers for GC01M087454 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J087451 Enhancer 0.4 Ensembl 600.7 +1.7 1674 0.6 JUNB ZNF133 GC01M087454 RNA5SP52 LOC105378834
GH01J087452 Enhancer 0.3 Ensembl 600.7 +0.6 573 1.2 NANOG GC01M087454 RNA5SP52 LOC105378834
GH01J087449 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.7 +3.2 3220 2.3 SP1 ZNF687 RELA CREM MLLT1 RAD21 ZBED1 IKZF1 ARID2 POLR2A GC01M087454 LOC105378834 RNA5SP52
GH01J087472 Enhancer 0.8 Ensembl ENCODE 0.4 -19.7 -19668 1.5 MZF1 ZNF629 SOX6 ZXDB ZSCAN5C FOSL1 GATA3 WT1 ZNF184 JUND GC01M087454 RNA5SP52 GC01P087516
GH01J087463 Enhancer 0.6 Ensembl 0.4 -10.9 -10928 1.4 CREM EED RUNX3 JUNB WT1 BATF ZFP91 ATF2 GC01M087454 RNA5SP52 GC01P087516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M087454 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M087454 Gene

Genomic Locations for GC01M087454 Gene
chr1:87,453,253-87,453,373
(GRCh38/hg38)
Size:
121 bases
Orientation:
Minus strand

Genomic View for GC01M087454 Gene

Genes around GC01M087454 on UCSC Golden Path with GeneCards custom track

GC01M087454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M087454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M087454 Gene

Proteins for GC01M087454 Gene

Post-translational modifications for GC01M087454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M087454 Gene

Domains & Families for GC01M087454 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M087454 Gene

Function for GC01M087454 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M087454 Gene

Localization for GC01M087454 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M087454 Gene

Pathways & Interactions for GC01M087454 Gene

PathCards logo

SuperPathways for GC01M087454 Gene

No Data Available

Interacting Proteins for GC01M087454 Gene

Gene Ontology (GO) - Biological Process for GC01M087454 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M087454 Gene

Drugs & Compounds for GC01M087454 Gene

No Compound Related Data Available

Transcripts for GC01M087454 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M087454 Gene

No ASD Table

Relevant External Links for GC01M087454 Gene

GeneLoc Exon Structure for
GC01M087454

No data available for mRNA/cDNA for GC01M087454 Gene

Expression for GC01M087454 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M087454 Gene

Orthologs for GC01M087454 Gene

No data available for Orthologs and Evolution for GC01M087454 Gene

Paralogs for GC01M087454 Gene

No data available for Paralogs for GC01M087454 Gene

Variants for GC01M087454 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M087454 Gene

Disorders for GC01M087454 Gene

No disorders were found for GC01M087454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M087454 Gene

Publications for GC01M087454 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

No data available for External Links for GC01M087454 Gene

Products for GC01M087454 Gene

Sources for GC01M087454 Gene

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