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Aliases for GC01M086864 Gene

Subcategory (RNA class) for GC01M086864 Gene

SECIS

Quality Score for this RNA gene is

15

Aliases for GC01M086864 Gene

No Aliases found

No data available for External Ids for GC01M086864 Gene

Summaries for GC01M086864 Gene

GeneCards Summary for GC01M086864 Gene

GC01M086864 is an RNA Gene, and is affiliated with the SECIS RNA class.

fRNAdb sequence ontologies for GC01M086864 Gene - the ORGUL cluster for this gene includes several descriptions:

  • SECIS_element: The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes.

  • Selenocysteine insertion sequence 1: The incorporation of selenocysteine into a protein sequence is directed by an in-frame UGA codon (usually a stop codon) within the coding region of the mRNA. Selenoprotein mRNAs contain a conserved secondary structure in the 3' UTR that is required for the distinction of UGA stop from UGA selenocysteine. The selenocysteine insertion sequence (SECIS) is around 60 nt in length and adopts a hairpin structure which is sufficiently well-defined and conserved to act as a computational screen for selenoprotein genes [2].

View fRNAdb secondary structures for GC01M086864

Additional gene information for GC01M086864 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M086864 Gene

Genomics for GC01M086864 Gene

GeneHancer (GH) Regulatory Elements for GC01M086864 Gene

Promoters and enhancers for GC01M086864 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J086860 Enhancer 0.6 Ensembl 0.7 +2.6 2577 0.2 GATAD2A SOX13 YY1 ZBTB33 NR2F2 HNF4A CEBPG MAX KDM1A THRB ENSG00000261737 GC01M086864 GC01M086865 ENSG00000284846 GC01M086809
GH01J086845 Enhancer 1 FANTOM5 ENCODE 0.4 +16.5 16511 1.1 ZNF473 SP7 ZNF174 SP1 POLR2A ZNF600 PRDM10 ZEB2 ZNF639 ZNF629 ENSG00000261737 SH3GLB1 ENSG00000284846 GC01M086864 GC01M086865 GC01M086809
GH01J086852 Enhancer 0.8 Ensembl ENCODE 0.4 +10.0 9977 1.8 SP1 HNF1A ZBTB33 HNF4A TCF12 HOMEZ RXRA REST HNF4G ATF3 ENSG00000261737 GC01M086864 GC01M086865 ENSG00000284846 GC01M086809
GH01J086858 Enhancer 0.5 Ensembl 0.7 +4.3 4277 1.2 ZNF316 MAFK NFATC1 EMSY ENSG00000261737 GC01M086864 GC01M086865 ENSG00000284846 GC01M086809
GH01J086903 Enhancer 0.7 Ensembl 0.3 -42.3 -42323 2.8 PRDM10 ZNF341 ZNF24 ZNF316 ZSCAN5C OSR2 ZBTB48 ZNF266 MAFG MAFK ENSG00000261737 HS2ST1 GC01M086809 SELENOF GC01M086864 GC01M086865
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M086864 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M086864 Gene

Genomic Locations for GC01M086864 Gene
chr1:86,862,808-86,862,878
(GRCh38/hg38)
Size:
71 bases
Orientation:
Minus strand

Genomic View for GC01M086864 Gene

Genes around GC01M086864 on UCSC Golden Path with GeneCards custom track

GC01M086864 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M086864 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M086864 Gene

ORGUL Member Location for GC01M086864 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M086864 Gene

Proteins for GC01M086864 Gene

Post-translational modifications for GC01M086864 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M086864 Gene

Domains & Families for GC01M086864 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M086864 Gene

Function for GC01M086864 Gene

Phenotypes From GWAS Catalog for GC01M086864 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M086864 Gene

Localization for GC01M086864 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M086864 Gene

Pathways & Interactions for GC01M086864 Gene

PathCards logo

SuperPathways for GC01M086864 Gene

No Data Available

Interacting Proteins for GC01M086864 Gene

Gene Ontology (GO) - Biological Process for GC01M086864 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M086864 Gene

Drugs & Compounds for GC01M086864 Gene

No Compound Related Data Available

Transcripts for GC01M086864 Gene

fRNAdb Secondary structures for GC01M086864 Gene

  • FR366429

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M086864 Gene

No ASD Table

Relevant External Links for GC01M086864 Gene

GeneLoc Exon Structure for
GC01M086864

No data available for mRNA/cDNA for GC01M086864 Gene

Expression for GC01M086864 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M086864 Gene

Orthologs for GC01M086864 Gene

No data available for Orthologs and Evolution for GC01M086864 Gene

Paralogs for GC01M086864 Gene

No data available for Paralogs for GC01M086864 Gene

Variants for GC01M086864 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M086864 Gene

Disorders for GC01M086864 Gene

No disorders were found for GC01M086864 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M086864 Gene

Publications for GC01M086864 Gene

  1. A survey of metazoan selenocysteine insertion sequences. (PMID: 12458087) Lambert A … Gautheret D (Biochimie 2002) 1
  2. A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. (PMID: 8634917) Walczak R … Krol A (RNA (New York, N.Y.) 1996) 1

No data available for External Links for GC01M086864 Gene

Products for GC01M086864 Gene

Sources for GC01M086864 Gene

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