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Aliases for GC01M055485 Gene

Subcategory (RNA class) for GC01M055485 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC01M055485 Gene

No Aliases found

ORGUL Members for GC01M055485 Gene

No data available for External Ids for GC01M055485 Gene

Summaries for GC01M055485 Gene

GeneCards Summary for GC01M055485 Gene

GC01M055485 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC01M055485 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC01M055485 Gene

Genomics for GC01M055485 Gene

GeneHancer (GH) Regulatory Elements for GC01M055485 Gene

Promoters and enhancers for GC01M055485 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J055478 Enhancer 0.8 Ensembl ENCODE 0.7 +4.9 4868 2.3 ZNF652 MLLT1 CTCF TFE3 RAD21 PKNOX1 ZBTB17 SMC3 ZNF654 ENSG00000272051 GC01M055485 GC01M055450 PIR60347 ENSG00000234810
GH01J055472 Enhancer 1 Ensembl ENCODE 0.4 +9.9 9871 5 MAFK TRIM24 SMARCA4 CAVIN1 DPF2 IKZF1 PRDM10 ZIC2 SMARCC1 ETV6 ENSG00000272051 GC01M055485 PIR60347 GC01M055450 ENSG00000234810
GH01J055502 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.1 -19113 2.2 SP7 ZBTB8A PRDM10 ZNF561 ZBTB44 ZBTB20 ZXDB NFE2 OSR2 ZNF580 GC01M055508 ENSG00000272051 GC01M055485 ENSG00000234810
GH01J055506 Enhancer 0.8 ENCODE dbSUPER 0.3 -21.8 -21834 0.7 ZNF561 SP1 ZBTB20 ATF3 RAD21 SIX5 RFX5 SMC3 STAT1 ZNF423 GC01M055508 ENSG00000272051 GC01M055485 ENSG00000234810
GH01J055469 Enhancer 0.6 Ensembl ENCODE 0.4 +16.6 16563 0.4 ZNF24 NRF1 ENSG00000272051 GC01M055450 GC01M055485 PIR60347 ENSG00000234810
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M055485 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M055485 Gene

Genomic Locations for GC01M055485 Gene
chr1:55,484,872-55,484,972
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand

Genomic View for GC01M055485 Gene

Genes around GC01M055485 on UCSC Golden Path with GeneCards custom track

GC01M055485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M055485 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M055485 Gene

Proteins for GC01M055485 Gene

Post-translational modifications for GC01M055485 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M055485 Gene

Domains & Families for GC01M055485 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M055485 Gene

Function for GC01M055485 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M055485 Gene

Localization for GC01M055485 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M055485 Gene

Pathways & Interactions for GC01M055485 Gene

PathCards logo

SuperPathways for GC01M055485 Gene

No Data Available

Interacting Proteins for GC01M055485 Gene

Gene Ontology (GO) - Biological Process for GC01M055485 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M055485 Gene

Drugs & Compounds for GC01M055485 Gene

No Compound Related Data Available

Transcripts for GC01M055485 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M055485 Gene

No ASD Table

Relevant External Links for GC01M055485 Gene

GeneLoc Exon Structure for
GC01M055485

No data available for mRNA/cDNA for GC01M055485 Gene

Expression for GC01M055485 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M055485 Gene

Orthologs for GC01M055485 Gene

No data available for Orthologs and Evolution for GC01M055485 Gene

Paralogs for GC01M055485 Gene

No data available for Paralogs for GC01M055485 Gene

Variants for GC01M055485 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M055485 Gene

Disorders for GC01M055485 Gene

No disorders were found for GC01M055485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M055485 Gene

Publications for GC01M055485 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

No data available for External Links for GC01M055485 Gene

Products for GC01M055485 Gene

Sources for GC01M055485 Gene

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