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Aliases for GC01M053772 Gene

Subcategory (RNA class) for GC01M053772 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC01M053772 Gene

No Aliases found

ORGUL Members for GC01M053772 Gene

No data available for External Ids for GC01M053772 Gene

Summaries for GC01M053772 Gene

GeneCards Summary for GC01M053772 Gene

GC01M053772 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M053772 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC01M053772 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M053772 Gene

Genomics for GC01M053772 Gene

GeneHancer (GH) Regulatory Elements for GC01M053772 Gene

Promoters and enhancers for GC01M053772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J053835 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 -66.2 -66179 4.5 ZNF652 SP1 ZFX ELF3 ZKSCAN8 MNT SIX5 ZNF148 NKRF POLR2A NDC1 MAGOH SSBP3-AS1 HSPB11 LRRC42 ENSG00000230953 ECHDC2 ENSG00000256407 CYB5RL CZIB
GH01J053765 Enhancer 0.6 ENCODE 0.7 +4.7 4723 2.3 PKNOX1 ZNF316 ZBTB11 GABPA MAFG ZNF395 JUN MAFK ZBTB40 EMSY GLIS1 NDC1 RPL37P7 LRRC42 HSPB11 YIPF1 GC01M053772 ENSG00000201003
GH01J053754 Enhancer 0.7 Ensembl 0.4 +16.4 16352 0.4 CC2D1A CTCF CEBPG ZNF644 RAD21 PRDM10 CEBPA REST TRIM22 CEBPB RNU7-95P NDC1 RPL37P7 GC01M053772 ENSG00000201003 GLIS1
GH01J053811 Enhancer 0.9 Ensembl ENCODE 0.3 -40.5 -40548 1 CC2D1A ZNF148 GTF2F1 CDC5L SMARCA4 DPF2 IKZF1 ZIC2 CTCF ZNF24 RNU7-95P NDC1 GC01M053772 ENSG00000201003
GH01J053781 Enhancer 0.6 Ensembl 0.4 -10.7 -10747 0.6 BACH1 PKNOX1 CEBPB SOX6 CTBP1 GABPA FOSL1 CEBPG ATF2 IRF9 YIPF1 ENSG00000201003 GC01M053772 NDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M053772 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M053772 Gene

Genomic Locations for GC01M053772 Gene
chr1:53,771,017-53,771,153
(GRCh38/hg38)
Size:
137 bases
Orientation:
Minus strand

Genomic View for GC01M053772 Gene

Genes around GC01M053772 on UCSC Golden Path with GeneCards custom track

GC01M053772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M053772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M053772 Gene

Proteins for GC01M053772 Gene

Post-translational modifications for GC01M053772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M053772 Gene

Domains & Families for GC01M053772 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M053772 Gene

Function for GC01M053772 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M053772 Gene

Localization for GC01M053772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M053772 Gene

Pathways & Interactions for GC01M053772 Gene

PathCards logo

SuperPathways for GC01M053772 Gene

No Data Available

Interacting Proteins for GC01M053772 Gene

Gene Ontology (GO) - Biological Process for GC01M053772 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M053772 Gene

Drugs & Compounds for GC01M053772 Gene

No Compound Related Data Available

Transcripts for GC01M053772 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M053772 Gene

No ASD Table

Relevant External Links for GC01M053772 Gene

GeneLoc Exon Structure for
GC01M053772

No data available for mRNA/cDNA for GC01M053772 Gene

Expression for GC01M053772 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M053772 Gene

Orthologs for GC01M053772 Gene

No data available for Orthologs and Evolution for GC01M053772 Gene

Paralogs for GC01M053772 Gene

No data available for Paralogs for GC01M053772 Gene

Variants for GC01M053772 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M053772 Gene

Disorders for GC01M053772 Gene

No disorders were found for GC01M053772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M053772 Gene

Publications for GC01M053772 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

No data available for External Links for GC01M053772 Gene

Products for GC01M053772 Gene

Sources for GC01M053772 Gene

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