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Aliases for GC01M030974 Gene

Subcategory (RNA class) for GC01M030974 Gene

snoRNA

Quality Score for this RNA gene is

22

Aliases for GC01M030974 Gene

No Aliases found

ORGUL Members for GC01M030974 Gene

No data available for External Ids for GC01M030974 Gene

Summaries for GC01M030974 Gene

GeneCards Summary for GC01M030974 Gene

GC01M030974 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M030974 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC01M030974

Additional gene information for GC01M030974 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M030974 Gene

Genomics for GC01M030974 Gene

GeneHancer (GH) Regulatory Elements for GC01M030974 Gene

Promoters and enhancers for GC01M030974 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030965 Enhancer 0.9 Ensembl ENCODE 600.7 +1.5 1515 1.6 ZNF148 POLR2A ZNF561 ZNF316 ZBTB44 ZEB1 ZBTB17 FOSL1 NFIC ZNF18 GC01M030974 GC01M030976 SNORD103C PIR59756 SNORD103B PUM1
GH01J030974 Enhancer 1 Ensembl ENCODE 0.4 -7.8 -7815 2.5 CEBPG ZNF384 PRDM10 ZIC2 CEBPA GATAD2A ZEB2 ATF7 ZNF629 CTBP1 SNORD103B GC01M030974 SNORD103C GC01P030988 PUM1
GH01J030982 Promoter 0.6 Ensembl 0.4 -14.5 -14464 0.2 ZNF316 SNORD103B GC01P030988 GC01M030974 SNORD103C PUM1
GH01J030980 Enhancer 0.4 ENCODE 0.4 -13.2 -13244 1.1 POLR2A REST SNORD103B GC01P030988 SNORD103C GC01M030974 PUM1
GH01J030986 Enhancer 0.4 Ensembl 0.4 -18.8 -18764 0.4 ZNF121 ZBTB33 ZNF362 GC01P030988 SNORD103C GC01M030974 PUM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M030974 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M030974 Gene

Genomic Locations for GC01M030974 Gene
chr1:30,968,162-30,968,237
(GRCh38/hg38)
Size:
76 bases
Orientation:
Minus strand

Genomic View for GC01M030974 Gene

Genes around GC01M030974 on UCSC Golden Path with GeneCards custom track

GC01M030974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M030974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M030974 Gene

ORGUL Member Location for GC01M030974 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M030974 Gene

Proteins for GC01M030974 Gene

Post-translational modifications for GC01M030974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M030974 Gene

Domains & Families for GC01M030974 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M030974 Gene

Function for GC01M030974 Gene

Phenotypes From GWAS Catalog for GC01M030974 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M030974 Gene

Localization for GC01M030974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M030974 Gene

Pathways & Interactions for GC01M030974 Gene

PathCards logo

SuperPathways for GC01M030974 Gene

No Data Available

Interacting Proteins for GC01M030974 Gene

Gene Ontology (GO) - Biological Process for GC01M030974 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M030974 Gene

Drugs & Compounds for GC01M030974 Gene

No Compound Related Data Available

Transcripts for GC01M030974 Gene

fRNAdb Secondary structures for GC01M030974 Gene

  • FR260785
  • FR326263

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M030974 Gene

No ASD Table

Relevant External Links for GC01M030974 Gene

GeneLoc Exon Structure for
GC01M030974

No data available for mRNA/cDNA for GC01M030974 Gene

Expression for GC01M030974 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M030974 Gene

Orthologs for GC01M030974 Gene

No data available for Orthologs and Evolution for GC01M030974 Gene

Paralogs for GC01M030974 Gene

No data available for Paralogs for GC01M030974 Gene

Variants for GC01M030974 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M030974 Gene

Disorders for GC01M030974 Gene

No disorders were found for GC01M030974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M030974 Gene

Publications for GC01M030974 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

No data available for External Links for GC01M030974 Gene

Products for GC01M030974 Gene

Sources for GC01M030974 Gene

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