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Aliases for GC01M028642 Gene

Subcategory (RNA class) for GC01M028642 Gene

snoRNA

Quality Score for this RNA gene is

17

Aliases for GC01M028642 Gene

No Aliases found

ORGUL Members for GC01M028642 Gene

No data available for External Ids for GC01M028642 Gene

Summaries for GC01M028642 Gene

GeneCards Summary for GC01M028642 Gene

GC01M028642 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M028642 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC01M028642 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M028642 Gene

Genomics for GC01M028642 Gene

GeneHancer (GH) Regulatory Elements for GC01M028642 Gene

Promoters and enhancers for GC01M028642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028579 Enhancer 0.7 ENCODE 600.7 +1.3 1298 0.3 POLR2A ZBED1 IKZF1 ZNF600 SMAD5 IKZF2 ZBTB48 MBD2 ZNF189 SUPT5H GC01M028642 SNORD99 TRNAU1AP
GH01J028581 Enhancer 0.7 ENCODE 600.7 +0.9 858 0.3 POLR2A ZBED1 IKZF1 ZNF600 BACH1 SMAD5 ZNF10 ZSCAN9 MYNN SUPT5H GC01M028618 GC01M028642 GC01M028648 GC01M028649 PIR59489 SNORA61 SNORD99 TRNAU1AP
GH01J028580 Enhancer 0.6 ENCODE 600.7 +0.5 478 0.2 POLR2A ZNF600 BACH1 SMAD5 ELF1 SUPT5H ZGPAT ZNF2 GC01M028618 GC01M028642 GC01M028648 GC01M028649 PIR59489 SNORA61 SNORD99 PHACTR4 TRNAU1AP
GH01J028577 Enhancer 0.5 ENCODE 600.7 +1.6 1648 0.1 ZBED1 IKZF1 ZNF600 IKZF2 POLR2A SUPT5H ZBTB33 GC01M028642 SNORD99 TRNAU1AP
GH01J028551 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +25.7 25703 2.6 HDGF SP1 ZFX ELF3 NKRF MLLT1 POLR2A GTF2F1 CSDE1 ZNF687 TRNAU1AP PRDX3P2 SNORA61 SNORD99 SNORA73B SNHG3 RCC1 PHACTR4 RAB42 DNAJC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M028642 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M028642 Gene

Genomic Locations for GC01M028642 Gene
chr1:28,578,742-28,578,822
(GRCh38/hg38)
Size:
81 bases
Orientation:
Minus strand

Genomic View for GC01M028642 Gene

Genes around GC01M028642 on UCSC Golden Path with GeneCards custom track

GC01M028642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M028642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M028642 Gene

Proteins for GC01M028642 Gene

Post-translational modifications for GC01M028642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M028642 Gene

Domains & Families for GC01M028642 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M028642 Gene

Function for GC01M028642 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M028642 Gene

Localization for GC01M028642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M028642 Gene

Pathways & Interactions for GC01M028642 Gene

PathCards logo

SuperPathways for GC01M028642 Gene

No Data Available

Interacting Proteins for GC01M028642 Gene

Gene Ontology (GO) - Biological Process for GC01M028642 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M028642 Gene

Drugs & Compounds for GC01M028642 Gene

No Compound Related Data Available

Transcripts for GC01M028642 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M028642 Gene

No ASD Table

Relevant External Links for GC01M028642 Gene

GeneLoc Exon Structure for
GC01M028642

No data available for mRNA/cDNA for GC01M028642 Gene

Expression for GC01M028642 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M028642 Gene

Orthologs for GC01M028642 Gene

No data available for Orthologs and Evolution for GC01M028642 Gene

Paralogs for GC01M028642 Gene

No data available for Paralogs for GC01M028642 Gene

Variants for GC01M028642 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M028642 Gene

Disorders for GC01M028642 Gene

No disorders were found for GC01M028642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M028642 Gene

Publications for GC01M028642 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

No data available for External Links for GC01M028642 Gene

Products for GC01M028642 Gene

Sources for GC01M028642 Gene

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