Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC01M028641 Gene

Subcategory (RNA class) for GC01M028641 Gene

snoRNA

Quality Score for this RNA gene is

17

Aliases for GC01M028641 Gene

No Aliases found

No data available for External Ids for GC01M028641 Gene

Summaries for GC01M028641 Gene

GeneCards Summary for GC01M028641 Gene

GC01M028641 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M028641 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA44: ACA44 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1]. The family also contains the mouse snoRNA sequence MBI-64 described in [2].

View fRNAdb secondary structures for GC01M028641

Additional gene information for GC01M028641 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M028641 Gene

Genomics for GC01M028641 Gene

GeneHancer (GH) Regulatory Elements for GC01M028641 Gene

Promoters and enhancers for GC01M028641 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028578 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 -0.7 -688 4.5 HDGF MTA3 CC2D1A SP1 ZFX ELF3 MNT SIX5 CBFA2T2 NKRF SNHG12 GC01M028584 GC01M028618 GC01M028640 GC01M028641 GC01M028648 GC01M028649 GC01M028650 PIR59489 SNORA16A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M028641 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M028641 Gene

Genomic Locations for GC01M028641 Gene
chr1:28,580,380-28,580,512
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand

Genomic View for GC01M028641 Gene

Genes around GC01M028641 on UCSC Golden Path with GeneCards custom track

GC01M028641 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M028641 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M028641 Gene

ORGUL Member Location for GC01M028641 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M028641 Gene

Proteins for GC01M028641 Gene

Post-translational modifications for GC01M028641 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M028641 Gene

Domains & Families for GC01M028641 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M028641 Gene

Function for GC01M028641 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M028641 Gene

Localization for GC01M028641 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M028641 Gene

Pathways & Interactions for GC01M028641 Gene

PathCards logo

SuperPathways for GC01M028641 Gene

No Data Available

Interacting Proteins for GC01M028641 Gene

Gene Ontology (GO) - Biological Process for GC01M028641 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M028641 Gene

Drugs & Compounds for GC01M028641 Gene

No Compound Related Data Available

Transcripts for GC01M028641 Gene

fRNAdb Secondary structures for GC01M028641 Gene

  • FR263430

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M028641 Gene

No ASD Table

Relevant External Links for GC01M028641 Gene

GeneLoc Exon Structure for
GC01M028641

No data available for mRNA/cDNA for GC01M028641 Gene

Expression for GC01M028641 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M028641 Gene

Orthologs for GC01M028641 Gene

No data available for Orthologs and Evolution for GC01M028641 Gene

Paralogs for GC01M028641 Gene

No data available for Paralogs for GC01M028641 Gene

Variants for GC01M028641 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M028641 Gene

Disorders for GC01M028641 Gene

No disorders were found for GC01M028641 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M028641 Gene

Publications for GC01M028641 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  5. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

No data available for External Links for GC01M028641 Gene

Products for GC01M028641 Gene

Sources for GC01M028641 Gene

Content
Loading form....