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Aliases for GC01M008206 Gene

Subcategory (RNA class) for GC01M008206 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC01M008206 Gene

No Aliases found

ORGUL Members for GC01M008206 Gene

No data available for External Ids for GC01M008206 Gene

Summaries for GC01M008206 Gene

GeneCards Summary for GC01M008206 Gene

GC01M008206 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC01M008206 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC01M008206 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M008206 Gene

Genomics for GC01M008206 Gene

GeneHancer (GH) Regulatory Elements for GC01M008206 Gene

Promoters and enhancers for GC01M008206 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J008199 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.2 3161 8.2 ELF3 CEBPG RERE NCOA3 MAFK TFE3 SP1 HNF1A PPARG SP5 LINC01714 ERRFI1 ENSG00000238290 SLC45A1 RNU1-7P GC01M008206
GH01J008209 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.3 -5337 4.1 ZNF652 ELF3 ZKSCAN8 MNT ZNF148 CEBPG RERE AHR MAFK TFE3 ERRFI1 ENSG00000238290 SLC45A1 GC01M008206 ENSG00000233645 RNU1-7P LINC01714
GH01J008214 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -10.0 -10011 4.2 CEBPG TRIM24 IKZF1 ZNF512 CEBPA HDAC1 CTBP1 YY1 NR2C2 NR2F1 ENSG00000238290 ERRFI1 SLC45A1 ENSG00000233645 GC01M008206 RNU1-7P LINC01714
GH01J008208 Enhancer 0.6 Ensembl dbSUPER 0.7 -2.5 -2504 0.6 CTBP1 BHLHE40 ERRFI1 GC01M008206 RNU1-7P LINC01714 ENSG00000233645
GH01J008218 Enhancer 0.9 ENCODE dbSUPER 0.4 -12.2 -12229 0.2 CEBPG TRIM24 CEBPA HDAC1 CEBPB MGA CTBP1 MAX NR2C2 CREM ENSG00000233645 ERRFI1 ENSG00000238290 SLC45A1 GC01M008206 RNU1-7P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M008206 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M008206 Gene

Genomic Locations for GC01M008206 Gene
chr1:8,206,433-8,206,597
(GRCh38/hg38)
Size:
165 bases
Orientation:
Minus strand

Genomic View for GC01M008206 Gene

Genes around GC01M008206 on UCSC Golden Path with GeneCards custom track

GC01M008206 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M008206 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M008206 Gene

Proteins for GC01M008206 Gene

Post-translational modifications for GC01M008206 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M008206 Gene

Domains & Families for GC01M008206 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M008206 Gene

Function for GC01M008206 Gene

Phenotypes From GWAS Catalog for GC01M008206 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M008206 Gene

Localization for GC01M008206 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M008206 Gene

Pathways & Interactions for GC01M008206 Gene

PathCards logo

SuperPathways for GC01M008206 Gene

No Data Available

Interacting Proteins for GC01M008206 Gene

Gene Ontology (GO) - Biological Process for GC01M008206 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M008206 Gene

Drugs & Compounds for GC01M008206 Gene

No Compound Related Data Available

Transcripts for GC01M008206 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M008206 Gene

No ASD Table

Relevant External Links for GC01M008206 Gene

GeneLoc Exon Structure for
GC01M008206

No data available for mRNA/cDNA for GC01M008206 Gene

Expression for GC01M008206 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M008206 Gene

Orthologs for GC01M008206 Gene

No data available for Orthologs and Evolution for GC01M008206 Gene

Paralogs for GC01M008206 Gene

No data available for Paralogs for GC01M008206 Gene

Variants for GC01M008206 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M008206 Gene

Disorders for GC01M008206 Gene

No disorders were found for GC01M008206 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M008206 Gene

Publications for GC01M008206 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

No data available for External Links for GC01M008206 Gene

Products for GC01M008206 Gene

Sources for GC01M008206 Gene

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