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Aliases for GC01M003454 Gene

Subcategory (RNA class) for GC01M003454 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for GC01M003454 Gene

No Aliases found

ORGUL Members for GC01M003454 Gene

No data available for External Ids for GC01M003454 Gene

Summaries for GC01M003454 Gene

GeneCards Summary for GC01M003454 Gene

GC01M003454 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GC01M003454 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC01M003454 Gene

Genomics for GC01M003454 Gene

GeneHancer (GH) Regulatory Elements for GC01M003454 Gene

Promoters and enhancers for GC01M003454 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J003453 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.3 -2288 8.8 ELF3 CTCF ZNF148 ZNF121 AHR TFE3 SP7 SP1 PPARG SP5 ARHGEF16 WRAP73 TP73-AS1 ENSG00000272153 C1orf174 GC01M003454 ENSG00000272088 GC01P003264
GH01J003470 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.4 -16.2 -16225 1.9 SP1 CTCF ZNF148 POLR2A AHR TFE3 HNF1A PPARG SP5 KLF14 ARHGEF16 MEGF6 ENSG00000272088 GC01M003454 GC01P003264
GH01J003469 Promoter/Enhancer 1 Ensembl dbSUPER 0.4 -14.6 -14556 0.6 KLF8 ZFHX2 KDM1A KLF1 EGR2 MEGF6 ARHGEF16 GC01M003454 ENSG00000272088 GC01P003264
GH01J003479 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -26.1 -26060 4.4 NCOA3 SP1 CREB1 RXRA ZIC2 CTCF CTBP1 MNT CEBPB JUN ARHGEF16 MEGF6 TPRG1L ENSG00000238260 WRAP73 TP73 ENSG00000272088 GC01M003454
GH01J003483 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -28.7 -28656 0.4 CTCF KAT8 ZNF600 GATAD2A REST KLF7 PATZ1 POLR2A TRIM22 ZBTB26 ARHGEF16 MEGF6 TPRG1L ENSG00000238260 TP73 WRAP73 ENSG00000272088 GC01M003454
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC01M003454 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC01M003454 Gene

Genomic Locations for GC01M003454 Gene
chr1:3,454,644-3,455,345
(GRCh38/hg38)
Size:
702 bases
Orientation:
Minus strand

Genomic View for GC01M003454 Gene

Genes around GC01M003454 on UCSC Golden Path with GeneCards custom track

GC01M003454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M003454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M003454 Gene

Proteins for GC01M003454 Gene

Post-translational modifications for GC01M003454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M003454 Gene

Domains & Families for GC01M003454 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M003454 Gene

Function for GC01M003454 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M003454 Gene

Localization for GC01M003454 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC01M003454 Gene

Pathways & Interactions for GC01M003454 Gene

PathCards logo

SuperPathways for GC01M003454 Gene

No Data Available

Interacting Proteins for GC01M003454 Gene

Gene Ontology (GO) - Biological Process for GC01M003454 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M003454 Gene

Drugs & Compounds for GC01M003454 Gene

No Compound Related Data Available

Transcripts for GC01M003454 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M003454 Gene

No ASD Table

Relevant External Links for GC01M003454 Gene

GeneLoc Exon Structure for
GC01M003454

No data available for mRNA/cDNA for GC01M003454 Gene

Expression for GC01M003454 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M003454 Gene

Orthologs for GC01M003454 Gene

No data available for Orthologs and Evolution for GC01M003454 Gene

Paralogs for GC01M003454 Gene

No data available for Paralogs for GC01M003454 Gene

Variants for GC01M003454 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC01M003454 Gene

Disorders for GC01M003454 Gene

No disorders were found for GC01M003454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M003454 Gene

Publications for GC01M003454 Gene

No publications were found for GC01M003454 Gene.

No data available for External Links for GC01M003454 Gene

Products for GC01M003454 Gene

Sources for GC01M003454 Gene

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