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Aliases for GAU1 Gene

Subcategory (RNA class) for GAU1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GAU1 Gene

  • GALNT8 Antisense Upstream 1 2 3
  • GALNT8 Divergent Transcript 2 3
  • AC005833.1 5
  • GALNT8-DT 3

External Ids for GAU1 Gene

Summaries for GAU1 Gene

GeneCards Summary for GAU1 Gene

GAU1 (GALNT8 Antisense Upstream 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GAU1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAU1 Gene

Genomics for GAU1 Gene

GeneHancer (GH) Regulatory Elements for GAU1 Gene

Promoters and enhancers for GAU1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J004719 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 650.7 -0.2 -216 2.1 NANOG POU5F1 SIN3A GAU1 GALNT8 DYRK4 ENSG00000255639
GH12J004647 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.8 +71.1 71050 2.4 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B ZNF207 AKAP3 NDUFA9 GC12P005806 LOC103568124 GALNT8 GAU1 DYRK4 LOC100420673 ENSG00000256381 ENSG00000272921
GH12J004857 Enhancer 0.9 Ensembl ENCODE 9.8 -137.8 -137821 0.6 CTCF RB1 SIN3A EBF1 IRF4 RAD21 ZNF335 GLIS2 ZNF366 ZBTB48 KCNA1 GAU1 GALNT8 GC12P005811 ENSG00000255608
GH12J004858 Enhancer 0.8 ENCODE 9.8 -138.5 -138508 0.2 GTF2F1 CTCF PKNOX1 TFAP4 ESRRA MAX SIN3A ZIC2 RARA TEAD3 KCNA1 GAU1 GALNT8 GC12P005811 ENSG00000255608
GH12J004855 Enhancer 0.6 ENCODE 9.8 -135.5 -135538 0.2 CTCF ZNF654 TRIM22 REST IRF4 RAD21 XRCC5 SCRT2 ZNF341 ZNF143 KCNA1 GAU1 GALNT8 GC12P005811 ENSG00000255608
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAU1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAU1 Gene

Genomic Locations for GAU1 Gene
chr12:4,700,417-4,720,102
(GRCh38/hg38)
Size:
19,686 bases
Orientation:
Minus strand
chr12:4,809,583-4,829,268
(GRCh37/hg19)
Size:
19,686 bases
Orientation:
Minus strand

Genomic View for GAU1 Gene

Genes around GAU1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAU1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAU1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAU1 Gene

Function for GAU1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAU1 Gene

Localization for GAU1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAU1 Gene

Pathways & Interactions for GAU1 Gene

No Data Available

Interacting Proteins for GAU1 Gene

Gene Ontology (GO) - Biological Process for GAU1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAU1 Gene

Drugs & Compounds for GAU1 Gene

No Compound Related Data Available

Transcripts for GAU1 Gene

mRNA/cDNA for GAU1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GAU1 Gene

No ASD Table

Relevant External Links for GAU1 Gene

GeneLoc Exon Structure for
GAU1
ECgene alternative splicing isoforms for
GAU1

Expression for GAU1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAU1 Gene

Orthologs for GAU1 Gene

Evolution for GAU1 Gene

ENSEMBL:
Gene Tree for GAU1 (if available)
TreeFam:
Gene Tree for GAU1 (if available)

No data available for Orthologs for GAU1 Gene

Paralogs for GAU1 Gene

No data available for Paralogs for GAU1 Gene

Variants for GAU1 Gene

Sequence variations from dbSNP and Humsavar for GAU1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000325650 -- 4,717,386(-) C/A intron_variant
rs1000412743 -- 4,710,864(-) G/C intron_variant
rs1000487955 -- 4,711,066(-) A/G intron_variant
rs1000895492 -- 4,703,602(-) G/A intron_variant
rs1000963393 -- 4,706,686(-) A/C intron_variant

Additional Variant Information for GAU1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAU1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAU1 Gene

Disorders for GAU1 Gene

No disorders were found for GAU1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAU1 Gene

Publications for GAU1 Gene

  1. Dynamic chromosomal tuning of a novel GAU1 lncing driver at chr12p13.32 accelerates tumorigenesis. (PMID: 29741668) Chai P … Fan X (Nucleic acids research 2018) 2 3 58

Products for GAU1 Gene

Sources for GAU1 Gene

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