Aliases for GATA3-AS1 Gene

Data sources for GATA3-AS1 Gene:

RNA type for GATA3-AS1 Gene

lncRNA

Aliases for GATA3-AS1 Gene

External Ids for GATA3-AS1 Gene

Previous GeneCards Identifiers for GATA3-AS1 Gene

  • GC10M008093
  • GC10M008095

Summaries for GATA3-AS1 Gene

GeneCards Summary for GATA3-AS1 Gene

GATA3-AS1 (GATA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GATA3-AS1 include Renal Cell Carcinoma, Nonpapillary.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GATA3-AS1 Gene

Genomics for GATA3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GATA3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GATA3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GATA3-AS1 Gene

Latest Assembly
chr10:8,015,565-8,054,365
(GRCh38/hg38)
Size:
38,801 bases
Orientation:
Minus strand

Previous Assembly
chr10:8,092,413-8,095,447
(GRCh37/hg19 by Entrez Gene)
Size:
3,035 bases
Orientation:
Minus strand

chr10:8,092,413-8,095,447
(GRCh37/hg19 by Ensembl)
Size:
3,035 bases
Orientation:
Minus strand

Genomic View for GATA3-AS1 Gene

Genes around GATA3-AS1 on UCSC Golden Path with GeneCards custom track
GATA3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
GATA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GATA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GATA3-AS1 Gene

Proteins for GATA3-AS1 Gene

Post-translational modifications for GATA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GATA3-AS1 Gene

Domains & Families for GATA3-AS1 Gene

Gene Families for GATA3-AS1 Gene

genes like me logo Genes that share domains with GATA3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GATA3-AS1 Gene

Function for GATA3-AS1 Gene

Phenotypes From GWAS Catalog for GATA3-AS1 Gene

Phenotypes for GATA3-AS1 Gene

genes like me logo Genes that share phenotypes with GATA3-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GATA3-AS1 Gene

Localization for GATA3-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GATA3-AS1 gene
Compartment Confidence
nucleus 1
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GATA3-AS1 Gene

Pathways & Interactions for GATA3-AS1 Gene

PathCards logo

SuperPathways for GATA3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GATA3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GATA3-AS1 Gene

Drugs & Compounds for GATA3-AS1 Gene

No Compound Related Data Available

Transcripts for GATA3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GATA3-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000051FC91_9606 lncRNA 2214 4

RefSeq: NR_024256,

Ensembl: ENST00000355358 (view in UCSC) ,

LNCipedia: GATA3-AS1:2,

NONCODE: NONHSAT011305.2,

URS000044059D_9606 lncRNA 822 4

Ensembl: ENST00000458727 (view in UCSC) ,

LncBook: HSALNT0158627,

LNCipedia: GATA3-AS1:5,

NONCODE: NONHSAT011314.2,

URS000039BF58_9606 lncRNA 678 4

RefSeq: NR_104330,

Ensembl: ENST00000438755 (view in UCSC) ,

LNCipedia: GATA3-AS1:8,

NONCODE: NONHSAT011310.2,

URS0000402C24_9606 lncRNA 567 4

Ensembl: ENST00000417359 (view in UCSC) ,

LncBook: HSALNT0158625,

LNCipedia: GATA3-AS1:7,

NONCODE: NONHSAT011313.2,

URS0000062C7A_9606 lncRNA 650 3

RefSeq: NR_104328,

Ensembl: ENST00000420815 (view in UCSC) ,

LNCipedia: GATA3-AS1:9,

GATA3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GATA3-AS1 Gene

1 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GATA3-AS1 Gene

No ASD Table

Relevant External Links for GATA3-AS1 Gene

GeneLoc Exon Structure for
GATA3-AS1

Expression for GATA3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GATA3-AS1

SOURCE GeneReport for Unigene cluster for GATA3-AS1 Gene:

Hs.158992
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GATA3-AS1 Gene

Orthologs for GATA3-AS1 Gene

Evolution for GATA3-AS1 Gene

ENSEMBL:
Gene Tree for GATA3-AS1 (if available)
TreeFam:
Gene Tree for GATA3-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for GATA3-AS1

No data available for Orthologs for GATA3-AS1 Gene

Paralogs for GATA3-AS1 Gene

No data available for Paralogs for GATA3-AS1 Gene

Variants for GATA3-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for GATA3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for GATA3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv118e199 CNV deletion 23128226
esv1000455 CNV deletion 20482838
nsv517198 CNV loss 19592680
nsv549933 CNV gain 21841781
nsv549949 CNV loss 21841781
nsv549950 CNV loss 21841781
nsv5754 CNV insertion 18451855
nsv831780 CNV loss 17160897
nsv951247 CNV deletion 24416366

Additional Variant Information for GATA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GATA3-AS1
Leiden Open Variation Database (LOVD)
GATA3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GATA3-AS1 Gene

Disorders for GATA3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GATA3-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
renal cell carcinoma, nonpapillary
  • rcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GATA3-AS1

genes like me logo Genes that share disorders with GATA3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GATA3-AS1 Gene

Publications for GATA3-AS1 Gene

  1. Divergent lncRNA GATA3-AS1 Regulates GATA3 Transcription in T-Helper 2 Cells. (PMID: 30420860) Gibbons HR … Aune TM (Frontiers in immunology 2018) 2 3
  2. Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1. (PMID: 23870669) Zhang H … Wang H (The Journal of allergy and clinical immunology 2013) 2 3
  3. LncRNA GATA3-AS1 facilitates tumour progression and immune escape in triple-negative breast cancer through destabilization of GATA3 but stabilization of PD-L1. (PMID: 32687248) Zhang M … Wang J (Cell proliferation 2020) 3
  4. Genome-wide diet-gene interaction analyses for risk of colorectal cancer. (PMID: 24743840) Figueiredo JC … GECCO (PLoS genetics 2014) 3
  5. Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray. (PMID: 24905231) Qin C … Yin C (PloS one 2014) 72

Products for GATA3-AS1 Gene

Sources for GATA3-AS1 Gene