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Aliases for GATA3-AS1 Gene

Subcategory (RNA class) for GATA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GATA3-AS1 Gene

  • GATA3 Antisense RNA 1 2 3 5

External Ids for GATA3-AS1 Gene

Previous GeneCards Identifiers for GATA3-AS1 Gene

  • GC10M008093

Summaries for GATA3-AS1 Gene

GeneCards Summary for GATA3-AS1 Gene

GATA3-AS1 (GATA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GATA3-AS1 include Renal Cell Carcinoma, Nonpapillary.

Additional gene information for GATA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GATA3-AS1 Gene

Genomics for GATA3-AS1 Gene

GeneHancer (GH) Regulatory Elements for GATA3-AS1 Gene

Promoters and enhancers for GATA3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GATA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GATA3-AS1 Gene

Genomic Locations for GATA3-AS1 Gene
chr10:8,050,450-8,053,484
(GRCh38/hg38)
Size:
3,035 bases
Orientation:
Minus strand
chr10:8,092,413-8,095,447
(GRCh37/hg19)
Size:
3,035 bases
Orientation:
Minus strand

Genomic View for GATA3-AS1 Gene

Genes around GATA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GATA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GATA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GATA3-AS1 Gene

Proteins for GATA3-AS1 Gene

Post-translational modifications for GATA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GATA3-AS1 Gene

Domains & Families for GATA3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GATA3-AS1 Gene

Function for GATA3-AS1 Gene

Phenotypes From GWAS Catalog for GATA3-AS1 Gene

Phenotypes for GATA3-AS1 Gene

genes like me logo Genes that share phenotypes with GATA3-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GATA3-AS1 Gene

Localization for GATA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GATA3-AS1 Gene

Pathways & Interactions for GATA3-AS1 Gene

PathCards logo

SuperPathways for GATA3-AS1 Gene

No Data Available

Interacting Proteins for GATA3-AS1 Gene

Gene Ontology (GO) - Biological Process for GATA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GATA3-AS1 Gene

Drugs & Compounds for GATA3-AS1 Gene

No Compound Related Data Available

Transcripts for GATA3-AS1 Gene

mRNA/cDNA for GATA3-AS1 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNA Central transcripts :

Unigene Clusters for GATA3-AS1 Gene

GATA3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GATA3-AS1 Gene

No ASD Table

Relevant External Links for GATA3-AS1 Gene

GeneLoc Exon Structure for
GATA3-AS1
ECgene alternative splicing isoforms for
GATA3-AS1

Expression for GATA3-AS1 Gene

SOURCE GeneReport for Unigene cluster for GATA3-AS1 Gene:

Hs.158992
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GATA3-AS1 Gene

Orthologs for GATA3-AS1 Gene

Evolution for GATA3-AS1 Gene

ENSEMBL:
Gene Tree for GATA3-AS1 (if available)
TreeFam:
Gene Tree for GATA3-AS1 (if available)

No data available for Orthologs for GATA3-AS1 Gene

Paralogs for GATA3-AS1 Gene

No data available for Paralogs for GATA3-AS1 Gene

Variants for GATA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for GATA3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs10905277 benign, Barakat syndrome 8,055,405(-) G/A upstream_transcript_variant
rs138512915 likely-benign, Barakat syndrome 8,055,297(-) G/A upstream_transcript_variant
rs34628951 likely-benign, Barakat syndrome 8,055,305(-) C/T upstream_transcript_variant
rs35971003 likely-benign, Barakat syndrome 8,055,392(-) G/T upstream_transcript_variant
rs397846644 benign, uncertain-significance, Barakat syndrome 8,054,907(-) TTTTTTTTTTTTT/TTTTTTTTTTTT/TTTTTTTTTTTTTT/TTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTT upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GATA3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv118e199 CNV deletion 23128226
esv1000455 CNV deletion 20482838
nsv517198 CNV loss 19592680
nsv549933 CNV gain 21841781
nsv549949 CNV loss 21841781
nsv549950 CNV loss 21841781
nsv5754 CNV insertion 18451855
nsv831780 CNV loss 17160897
nsv951247 CNV deletion 24416366

Additional Variant Information for GATA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GATA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GATA3-AS1 Gene

Disorders for GATA3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GATA3-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
renal cell carcinoma, nonpapillary
  • rcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GATA3-AS1

genes like me logo Genes that share disorders with GATA3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GATA3-AS1 Gene

Publications for GATA3-AS1 Gene

  1. Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1. (PMID: 23870669) Zhang H … Wang H (The Journal of allergy and clinical immunology 2013) 2 3 58
  2. Divergent lncRNA GATA3-AS1 Regulates GATA3 Transcription in T-Helper 2 Cells. (PMID: 30420860) Gibbons HR … Aune TM (Frontiers in immunology 2018) 3 58
  3. Genome-wide diet-gene interaction analyses for risk of colorectal cancer. (PMID: 24743840) Figueiredo JC … GECCO (PLoS genetics 2014) 3 58
  4. Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. (PMID: 24056746) Hu G … Zhao K (Nature immunology 2013) 3 58
  5. Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma. (PMID: 24149102) Frampton M … Houlston RS (Nature communications 2013) 3 58

Products for GATA3-AS1 Gene

Sources for GATA3-AS1 Gene

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