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Aliases for GATA2-AS1 Gene

Subcategory (RNA class) for GATA2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GATA2-AS1 Gene

  • GATA2 Antisense RNA 1 2 3 5

External Ids for GATA2-AS1 Gene

Summaries for GATA2-AS1 Gene

GeneCards Summary for GATA2-AS1 Gene

GATA2-AS1 (GATA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GATA2-AS1 include Lymphedema, Primary, With Myelodysplasia.

Additional gene information for GATA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GATA2-AS1 Gene

Genomics for GATA2-AS1 Gene

GeneHancer (GH) Regulatory Elements for GATA2-AS1 Gene

Promoters and enhancers for GATA2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J128481 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 608.6 -1.5 -1454 11.8 HDGF SP1 ZFX CBFA2T2 ZNF148 POLR2A MLLT1 GTF2F1 MYC ZBTB7A GATA2-AS1 GATA2 DNAJB8 DNAJB8-AS1 TMED10P2 POU5F1P6
GH03J128503 Enhancer 1.2 Ensembl ENCODE dbSUPER 8.4 +16.8 16835 4.3 CBFA2T2 MYC TRIM24 EGR1 SMARCA4 FOSL2 CREB1 DPF2 TARDBP CTBP1 LOC90246 LINC01565 DNAJB8 DNAJB8-AS1 ACAD9 GATA2-AS1 TMED10P2 GATA2
GH03J128845 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 4.8 +356.8 356816 2 HDGF CTCF ZFX GTF2F1 ZSCAN21 AHR SP7 SP1 KLF14 SP5 GC03P130147 GC03P130159 GC03P130162 GC03M128960 GC03M128965 GC03M128967 GC03M128969 PIR33616 PIR50684 PIR40509
GH03J128497 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.7 8650 1.1 EGR1 GMEB1 RFX1 CTCF POLR2A HDAC1 NRF1 EP300 EZH2 MGA DNAJB8 GATA2 LINC01565 DNAJB8-AS1 ABTB1 EEFSEC GATA2-AS1 LOC90246
GH03J128495 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +6.5 6458 0.9 CBFA2T2 MLLT1 CDC5L SMARCA4 ARID2 DPF2 REST ZNF24 HDAC1 EP300 GATA2 DNAJB8 DNAJB8-AS1 EEFSEC GATA2-AS1 LOC90246
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GATA2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GATA2-AS1 Gene

Genomic Locations for GATA2-AS1 Gene
chr3:128,489,203-128,503,207
(GRCh38/hg38)
Size:
14,005 bases
Orientation:
Plus strand
chr3:128,208,055-128,221,191
(GRCh37/hg19)
Size:
13,137 bases
Orientation:
Plus strand

Genomic View for GATA2-AS1 Gene

Genes around GATA2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GATA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GATA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GATA2-AS1 Gene

Proteins for GATA2-AS1 Gene

Post-translational modifications for GATA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GATA2-AS1 Gene

Domains & Families for GATA2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GATA2-AS1 Gene

Function for GATA2-AS1 Gene

Phenotypes From GWAS Catalog for GATA2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GATA2-AS1 Gene

Localization for GATA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GATA2-AS1 Gene

Pathways & Interactions for GATA2-AS1 Gene

PathCards logo

SuperPathways for GATA2-AS1 Gene

No Data Available

Interacting Proteins for GATA2-AS1 Gene

Gene Ontology (GO) - Biological Process for GATA2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GATA2-AS1 Gene

Drugs & Compounds for GATA2-AS1 Gene

No Compound Related Data Available

Transcripts for GATA2-AS1 Gene

mRNA/cDNA for GATA2-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GATA2-AS1 Gene

No ASD Table

Relevant External Links for GATA2-AS1 Gene

GeneLoc Exon Structure for
GATA2-AS1
ECgene alternative splicing isoforms for
GATA2-AS1

Expression for GATA2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GATA2-AS1 Gene

Orthologs for GATA2-AS1 Gene

Evolution for GATA2-AS1 Gene

ENSEMBL:
Gene Tree for GATA2-AS1 (if available)
TreeFam:
Gene Tree for GATA2-AS1 (if available)

No data available for Orthologs for GATA2-AS1 Gene

Paralogs for GATA2-AS1 Gene

No data available for Paralogs for GATA2-AS1 Gene

Variants for GATA2-AS1 Gene

Sequence variations from dbSNP and Humsavar for GATA2-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs559062253 uncertain-significance, Lymphedema, primary, with myelodysplasia 128,492,886(+) G/A intron_variant
rs563914744 likely-benign, benign, Lymphedema, primary, with myelodysplasia, not specified 128,493,129(+) A/C intron_variant
rs886057934 uncertain-significance, Lymphedema, primary, with myelodysplasia 128,493,033(+) G/T intron_variant
rs886057935 uncertain-significance, Lymphedema, primary, with myelodysplasia 128,493,046(+) G/A intron_variant
rs886057936 uncertain-significance, Lymphedema, primary, with myelodysplasia 128,493,068(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GATA2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2657669 CNV deletion 23128226
esv2725891 CNV deletion 23290073
esv2759176 CNV loss 17122850
nsv10318 CNV gain 18304495
nsv508241 CNV deletion 20534489
nsv516926 CNV loss 19592680

Additional Variant Information for GATA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GATA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GATA2-AS1 Gene

Disorders for GATA2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GATA2-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
lymphedema, primary, with myelodysplasia
  • emberger syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GATA2-AS1

genes like me logo Genes that share disorders with GATA2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GATA2-AS1 Gene

Publications for GATA2-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for GATA2-AS1 Gene

Sources for GATA2-AS1 Gene

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