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Aliases for GAS6-DT Gene

Subcategory (RNA class) for GAS6-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GAS6-DT Gene

  • GAS6 Divergent Transcript 2 3 5
  • GAS6 Antisense RNA 2 (Head To Head) 2 3
  • GAS6-AS2 3

External Ids for GAS6-DT Gene

Previous HGNC Symbols for GAS6-DT Gene

  • GAS6-AS2

Summaries for GAS6-DT Gene

GeneCards Summary for GAS6-DT Gene

GAS6-DT (GAS6 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GAS6-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAS6-DT Gene

Genomics for GAS6-DT Gene

GeneHancer (GH) Regulatory Elements for GAS6-DT Gene

Promoters and enhancers for GAS6-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J113859 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -2.0 -1992 6.1 SP1 ZFX ZNF148 SP7 ZNF639 EGR1 GLIS2 ZNF24 IKZF1 ZBTB8A GAS6 GAS6-DT CDC16 UPF3A GAS6-AS1 TMEM255B LOC105370380
GH13J113296 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.6 -566.7 -566667 3.8 SP1 CC2D1A ZFX ELF3 MNT CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 LAMP1 CDC16 TUBGCP3 PCID2 UPF3A GAS6-DT GAS6 CUL4A GAS6-AS1 PIR60275
GH13J113774 Enhancer 1 Ensembl ENCODE 21.8 -89.5 -89467 1 ZNF473 ZNF121 ZSCAN21 CDC5L ZNF704 ZNF547 ZNF544 ZNF776 ZNF501 ZNF140 CDC16 UPF3A PCID2 GAS6-DT CHAMP1 GAS6 DCUN1D2-AS TMEM255B GAS6-AS1
GH13J113874 Enhancer 0.6 Ensembl dbSUPER 0.4 +7.4 7433 6 ZEB2 ZEB1 ZNF558 TMEM255B UPF3A GAS6-DT ENSG00000237699
GH13J113876 Enhancer 0.6 Ensembl ENCODE 0.4 +12.5 12465 1.3 ZFHX2 KLF1 EGR2 ENSG00000237699 GAS6-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAS6-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAS6-DT Gene

Genomic Locations for GAS6-DT Gene
chr13:113,864,168-113,866,833
(GRCh38/hg38)
Size:
2,666 bases
Orientation:
Plus strand
chr13:114,567,141-114,569,806
(GRCh37/hg19)
Size:
2,666 bases
Orientation:
Plus strand

Genomic View for GAS6-DT Gene

Genes around GAS6-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS6-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS6-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS6-DT Gene

Proteins for GAS6-DT Gene

Post-translational modifications for GAS6-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAS6-DT Gene

Domains & Families for GAS6-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAS6-DT Gene

Function for GAS6-DT Gene

Phenotypes From GWAS Catalog for GAS6-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAS6-DT Gene

Localization for GAS6-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAS6-DT Gene

Pathways & Interactions for GAS6-DT Gene

PathCards logo

SuperPathways for GAS6-DT Gene

No Data Available

Interacting Proteins for GAS6-DT Gene

Gene Ontology (GO) - Biological Process for GAS6-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAS6-DT Gene

Drugs & Compounds for GAS6-DT Gene

No Compound Related Data Available

Transcripts for GAS6-DT Gene

mRNA/cDNA for GAS6-DT Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GAS6-DT Gene

No ASD Table

Relevant External Links for GAS6-DT Gene

GeneLoc Exon Structure for
GAS6-DT
ECgene alternative splicing isoforms for
GAS6-DT

Expression for GAS6-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS6-DT Gene

Orthologs for GAS6-DT Gene

Evolution for GAS6-DT Gene

ENSEMBL:
Gene Tree for GAS6-DT (if available)
TreeFam:
Gene Tree for GAS6-DT (if available)

No data available for Orthologs for GAS6-DT Gene

Paralogs for GAS6-DT Gene

No data available for Paralogs for GAS6-DT Gene

Variants for GAS6-DT Gene

Sequence variations from dbSNP and Humsavar for GAS6-DT Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1001605927 -- 113,867,275(+) G/A downstream_transcript_variant
rs1001740547 -- 113,862,574(+) C/A upstream_transcript_variant
rs1002422663 -- 113,866,155(+) A/C non_coding_transcript_variant
rs1002563098 -- 113,867,066(+) G/A downstream_transcript_variant
rs1003571405 -- 113,865,765(+) C/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS6-DT Gene

Variant ID Type Subtype PubMed ID
dgv3450n54 CNV gain 21841781
esv3582860 CNV gain 25503493
esv3633626 CNV gain 21293372
nsv1043348 CNV gain 25217958
nsv511027 OTHER inversion 20534489
nsv563387 CNV loss 21841781
nsv563388 CNV loss 21841781
nsv826836 CNV loss 20364138
nsv832727 CNV loss 17160897

Additional Variant Information for GAS6-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS6-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GAS6-DT Gene

Disorders for GAS6-DT Gene

No disorders were found for GAS6-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAS6-DT Gene

Publications for GAS6-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for GAS6-DT Gene

Sources for GAS6-DT Gene

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