Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GAS6-AS1 Gene

Subcategory (RNA class) for GAS6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GAS6-AS1 Gene

  • GAS6 Antisense RNA 1 2 3 5
  • GAS6 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GAS6-AS1 Gene

Previous GeneCards Identifiers for GAS6-AS1 Gene

  • GC00U933518
  • GC13P114519
  • GC13P114548
  • GC13P114551

Summaries for GAS6-AS1 Gene

GeneCards Summary for GAS6-AS1 Gene

GAS6-AS1 (GAS6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GAS6-AS1 include Lung Cancer.

Additional gene information for GAS6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAS6-AS1 Gene

Genomics for GAS6-AS1 Gene

GeneHancer (GH) Regulatory Elements for GAS6-AS1 Gene

Promoters and enhancers for GAS6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J113815 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 610.9 +0.1 124 1.3 CC2D1A RFX1 ZNF143 POLR2A ZFX MNT CBFB ZNF766 ELF1 GABPA GAS6-AS1 LOC105370380 TMEM255B
GH13J113813 Enhancer 0.5 Ensembl ENCODE 611.7 -1.6 -1607 1.6 NR2F2 GAS6-AS1 TMEM255B F10
GH13J113206 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.7 -606.8 -606768 5 ZFX SP1 ELF3 ZKSCAN8 MNT SIX5 ZNF148 NKRF ZNF121 CEBPG PCID2 CUL4A TUBGCP3 PROZ GAS6-AS1 GAS6 DCUN1D2-AS LAMP1 GC13M113076
GH13J114126 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +315.1 315084 8.9 MTA3 ZFX ZNF148 NKRF MLLT1 ZNF121 ZNF687 CDC5L NCOA6 ZBTB7A GAS6 RASA3 CDC16 PCID2 CHAMP1 UPF3A GAS6-AS1 DCUN1D2-AS LINC00565 PIR55533
GH13J114312 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 +498.9 498919 3.4 SP1 ZFX MNT ZNF148 NKRF POLR2A ZNF687 TFE3 YY1 SP7 CHAMP1 UPF3A CDC16 GAS6-AS1 TMEM255B LINC01054
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAS6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAS6-AS1 Gene

Genomic Locations for GAS6-AS1 Gene
chr13:113,815,610-113,845,744
(GRCh38/hg38)
Size:
30,135 bases
Orientation:
Plus strand
chr13:114,545,293-114,548,734
(GRCh37/hg19)
Size:
3,442 bases
Orientation:
Plus strand

Genomic View for GAS6-AS1 Gene

Genes around GAS6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS6-AS1 Gene

Proteins for GAS6-AS1 Gene

Post-translational modifications for GAS6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAS6-AS1 Gene

Domains & Families for GAS6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAS6-AS1 Gene

Function for GAS6-AS1 Gene

Phenotypes From GWAS Catalog for GAS6-AS1 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GAS6-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAS6-AS1 Gene

Localization for GAS6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAS6-AS1 Gene

Pathways & Interactions for GAS6-AS1 Gene

PathCards logo

SuperPathways for GAS6-AS1 Gene

No Data Available

Interacting Proteins for GAS6-AS1 Gene

Gene Ontology (GO) - Biological Process for GAS6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAS6-AS1 Gene

Drugs & Compounds for GAS6-AS1 Gene

No Compound Related Data Available

Transcripts for GAS6-AS1 Gene

mRNA/cDNA for GAS6-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Unigene Clusters for GAS6-AS1 Gene

GAS6 antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GAS6-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for GAS6-AS1 Gene

No ASD Table

Relevant External Links for GAS6-AS1 Gene

GeneLoc Exon Structure for
GAS6-AS1
ECgene alternative splicing isoforms for
GAS6-AS1

Expression for GAS6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAS6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GAS6-AS1 Gene

This gene is overexpressed in Artery - Aorta (x6.3).

SOURCE GeneReport for Unigene cluster for GAS6-AS1 Gene:

Hs.369201
genes like me logo Genes that share expression patterns with GAS6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS6-AS1 Gene

Orthologs for GAS6-AS1 Gene

Evolution for GAS6-AS1 Gene

ENSEMBL:
Gene Tree for GAS6-AS1 (if available)
TreeFam:
Gene Tree for GAS6-AS1 (if available)

No data available for Orthologs for GAS6-AS1 Gene

Paralogs for GAS6-AS1 Gene

No data available for Paralogs for GAS6-AS1 Gene

Variants for GAS6-AS1 Gene

Sequence variations from dbSNP and Humsavar for GAS6-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000057786 -- 113,823,310(+) G/A intron_variant
rs1000073529 -- 113,826,882(+) G/A/C intron_variant
rs1000229234 -- 113,816,334(+) G/C intron_variant
rs1000309360 -- 113,820,468(+) T/C intron_variant
rs1000309563 -- 113,840,600(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS6-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1135e59 CNV duplication 20981092
dgv257e201 CNV deletion 23290073
dgv258e201 CNV deletion 23290073
dgv3450n54 CNV gain 21841781
dgv3451n54 CNV loss 21841781
esv1132540 CNV insertion 17803354
esv1157105 CNV insertion 17803354
esv1258186 CNV insertion 17803354
esv1344439 CNV insertion 17803354
esv1443107 CNV insertion 17803354
esv1444149 CNV deletion 17803354
esv1993584 CNV deletion 18987734
esv24756 CNV gain+loss 19812545
esv2493664 CNV deletion 19546169
esv2609338 CNV insertion 19546169
esv2677402 CNV deletion 23128226
esv27370 CNV loss 19812545
esv2748392 CNV deletion 23290073
esv2748393 CNV deletion 23290073
esv2748394 CNV deletion 23290073
esv2748395 CNV deletion 23290073
esv2748396 CNV deletion 23290073
esv2748398 CNV deletion 23290073
esv2748399 CNV deletion 23290073
esv2748401 CNV deletion 23290073
esv2748403 CNV deletion 23290073
esv2748404 CNV deletion 23290073
esv2748406 CNV deletion 23290073
esv2748409 CNV deletion 23290073
esv2748410 CNV deletion 23290073
esv2748411 CNV deletion 23290073
esv2748412 CNV deletion 23290073
esv2748413 CNV deletion 23290073
esv2748414 CNV deletion 23290073
esv3395766 CNV duplication 20981092
esv3410329 CNV duplication 20981092
esv3445699 CNV duplication 20981092
esv3551172 CNV deletion 23714750
esv3582860 CNV gain 25503493
esv3633615 CNV gain 21293372
esv3633621 CNV loss 21293372
esv3633622 CNV gain 21293372
esv3633624 CNV loss 21293372
esv3633625 CNV gain 21293372
nsv1043348 CNV gain 25217958
nsv1070623 CNV deletion 25765185
nsv1111098 CNV tandem duplication 24896259
nsv1118277 CNV deletion 24896259
nsv1122874 CNV deletion 24896259
nsv1129173 CNV insertion 24896259
nsv1130680 CNV deletion 24896259
nsv1135806 CNV deletion 24896259
nsv1142162 CNV tandem duplication 24896259
nsv1148131 CNV insertion 26484159
nsv511027 OTHER inversion 20534489
nsv563387 CNV loss 21841781
nsv563388 CNV loss 21841781
nsv563390 CNV loss 21841781
nsv563391 CNV loss 21841781
nsv563392 CNV loss 21841781
nsv563396 CNV loss 21841781
nsv820519 CNV duplication 20802225
nsv826836 CNV loss 20364138
nsv826837 CNV loss 20364138
nsv832727 CNV loss 17160897
nsv951933 CNV deletion 24416366
nsv957449 CNV deletion 24416366
nsv957485 CNV deletion 24416366

Additional Variant Information for GAS6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GAS6-AS1 Gene

Disorders for GAS6-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GAS6-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GAS6-AS1

genes like me logo Genes that share disorders with GAS6-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GAS6-AS1 Gene

Publications for GAS6-AS1 Gene

  1. Low expression of long noncoding RNA GAS6-AS1 predicts a poor prognosis in patients with NSCLC. (PMID: 23979857) Han L … Shu YQ (Medical oncology (Northwood, London, England) 2013) 2 3 58
  2. Long non-coding antisense RNA GAS6-AS1 supports gastric cancer progression via increasing GAS6 expression. (PMID: 30735718) Zhang P … Chen X (Gene 2019) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GAS6-AS1 Gene

Sources for GAS6-AS1 Gene

Content
Loading form....