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Aliases for GAS5-AS1 Gene

Subcategory (RNA class) for GAS5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GAS5-AS1 Gene

  • GAS5 Antisense RNA 1 2 3 5
  • GAS5 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GAS5-AS1 Gene

Previous GeneCards Identifiers for GAS5-AS1 Gene

  • GC01P173833

Summaries for GAS5-AS1 Gene

GeneCards Summary for GAS5-AS1 Gene

GAS5-AS1 (GAS5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GAS5-AS1 include Lung Cancer and Hepatocellular Carcinoma.

Additional gene information for GAS5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAS5-AS1 Gene

Genomics for GAS5-AS1 Gene

GeneHancer (GH) Regulatory Elements for GAS5-AS1 Gene

Promoters and enhancers for GAS5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173473 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 20.9 -386.4 -386427 7.1 CLOCK DMAP1 YY1 E2F8 SP3 NFYC MEF2D ZNF610 ZNF585B GLIS1 PRDX6 LOC100506023 TNFSF4 KLHL20 GAS5 GAS5-AS1 CENPL DARS2 LOC101928673
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.5 +3.5 3512 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174038 GC01M174039 GC01M174041 GC01M174042 GC01M174043 GC01M174045 GC01M174046 GC01M174047
GH01J173714 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -147.8 -147810 2.3 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC SSRP1 KLHL20 ANKRD45 RC3H1 DARS2 GAS5 GAS5-AS1 RPS27P7
GH01J172902 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -956.6 -956556 9 CHAMP1 ZNF766 FOS RUNX3 CAVIN1 ZBTB11 CEBPB ZNF592 ZNF148 MEF2D ENSG00000224000 KLHL20 TNFSF18 DNM3OS GAS5-AS1 ENSG00000224228 GAS5 AIMP1P2
GH01J174206 Enhancer 0.9 FANTOM5 Ensembl 10.7 +343.5 343462 0.6 SRF ZBED1 MAX JUNB ZNF354B ATF2 MITF MEF2D ZNF316 NFATC1 RABGAP1L ANKRD45 KLHL20 GAS5-AS1 GAS5 RC3H1 GC01M174104 LOC102724601
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAS5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAS5-AS1 Gene

Genomic Locations for GAS5-AS1 Gene
chr1:173,863,248-173,863,941
(GRCh38/hg38)
Size:
694 bases
Orientation:
Plus strand
chr1:173,832,386-173,833,079
(GRCh37/hg19)
Size:
694 bases
Orientation:
Plus strand

Genomic View for GAS5-AS1 Gene

Genes around GAS5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS5-AS1 Gene

Function for GAS5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAS5-AS1 Gene

Localization for GAS5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAS5-AS1 Gene

Pathways & Interactions for GAS5-AS1 Gene

SuperPathways for GAS5-AS1 Gene

No Data Available

Interacting Proteins for GAS5-AS1 Gene

Gene Ontology (GO) - Biological Process for GAS5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAS5-AS1 Gene

Drugs & Compounds for GAS5-AS1 Gene

No Compound Related Data Available

Transcripts for GAS5-AS1 Gene

mRNA/cDNA for GAS5-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for GAS5-AS1 Gene

GAS5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GAS5-AS1 Gene

No ASD Table

Relevant External Links for GAS5-AS1 Gene

GeneLoc Exon Structure for
GAS5-AS1
ECgene alternative splicing isoforms for
GAS5-AS1

Expression for GAS5-AS1 Gene

SOURCE GeneReport for Unigene cluster for GAS5-AS1 Gene:

Hs.656411
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS5-AS1 Gene

Orthologs for GAS5-AS1 Gene

Evolution for GAS5-AS1 Gene

ENSEMBL:
Gene Tree for GAS5-AS1 (if available)
TreeFam:
Gene Tree for GAS5-AS1 (if available)

No data available for Orthologs for GAS5-AS1 Gene

Paralogs for GAS5-AS1 Gene

No data available for Paralogs for GAS5-AS1 Gene

Variants for GAS5-AS1 Gene

Sequence variations from dbSNP and Humsavar for GAS5-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000068455 -- 173,862,441(+) GGGGG/GGGGGG upstream_transcript_variant
rs1000290711 -- 173,862,545(+) C/A upstream_transcript_variant
rs1000390155 -- 173,863,801(+) A/G non_coding_transcript_variant
rs1000672494 -- 173,863,068(+) G/C upstream_transcript_variant
rs1000685106 -- 173,862,730(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for GAS5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GAS5-AS1 Gene

Disorders for GAS5-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GAS5-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • lung cancer, susceptibility to
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GAS5-AS1

genes like me logo Genes that share disorders with GAS5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GAS5-AS1 Gene

Publications for GAS5-AS1 Gene

  1. LncRNA GAS5-AS1 inhibits myofibroblasts activities in oral submucous fibrosis. (PMID: 29249416) Lin CY … Yu CH (Journal of the Formosan Medical Association = Taiwan yi zhi 2017) 2 3 58

Products for GAS5-AS1 Gene

Sources for GAS5-AS1 Gene

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