Aliases for GAS5-AS1 Gene

Subcategory (RNA class) for GAS5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for GAS5-AS1 Gene

  • GAS5 Antisense RNA 1 2 3 5
  • GAS5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GAS5-AS1 2 170
  • HSALNG0008546 169
  • NONHSAG003505 94

External Ids for GAS5-AS1 Gene

Previous GeneCards Identifiers for GAS5-AS1 Gene

  • GC01P173833

Summaries for GAS5-AS1 Gene

GeneCards Summary for GAS5-AS1 Gene

GAS5-AS1 (GAS5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GAS5-AS1 include Lung Cancer and Hepatocellular Carcinoma.

Additional gene information for GAS5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GAS5-AS1 Gene

Genomics for GAS5-AS1 Gene

GeneHancer (GH) Regulatory Elements for GAS5-AS1 Gene

Promoters and enhancers for GAS5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAS5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAS5-AS1 Gene

Genomic Locations for GAS5-AS1 Gene
chr1:173,862,152-173,863,942
(GRCh38/hg38)
Size:
1,791 bases
Orientation:
Plus strand
chr1:173,832,386-173,833,079
(GRCh37/hg19)
Size:
694 bases
Orientation:
Plus strand

Genomic View for GAS5-AS1 Gene

Genes around GAS5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS5-AS1 Gene

Proteins for GAS5-AS1 Gene

Post-translational modifications for GAS5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAS5-AS1 Gene

Domains & Families for GAS5-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GAS5-AS1 Gene

Function for GAS5-AS1 Gene

Phenotypes From GWAS Catalog for GAS5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAS5-AS1 Gene

Localization for GAS5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAS5-AS1 Gene

Pathways & Interactions for GAS5-AS1 Gene

PathCards logo

SuperPathways for GAS5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GAS5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAS5-AS1 Gene

Drugs & Compounds for GAS5-AS1 Gene

No Compound Related Data Available

Transcripts for GAS5-AS1 Gene

mRNA/cDNA for GAS5-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(3) LncBook transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GAS5-AS1 Gene

No ASD Table

Relevant External Links for GAS5-AS1 Gene

GeneLoc Exon Structure for
GAS5-AS1
ECgene alternative splicing isoforms for
GAS5-AS1

Expression for GAS5-AS1 Gene

SOURCE GeneReport for Unigene cluster for GAS5-AS1 Gene:

Hs.656411
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS5-AS1 Gene

Orthologs for GAS5-AS1 Gene

Evolution for GAS5-AS1 Gene

ENSEMBL:
Gene Tree for GAS5-AS1 (if available)
TreeFam:
Gene Tree for GAS5-AS1 (if available)

No data available for Orthologs for GAS5-AS1 Gene

Paralogs for GAS5-AS1 Gene

No data available for Paralogs for GAS5-AS1 Gene

Variants for GAS5-AS1 Gene

Sequence variations from dbSNP and Humsavar for GAS5-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000068455 -- 173,862,441(+) GGGGG/GGGGGG upstream_transcript_variant
rs1000290711 -- 173,862,545(+) C/A upstream_transcript_variant
rs1000390155 -- 173,863,801(+) A/G non_coding_transcript_variant
rs1000672494 -- 173,863,068(+) G/C upstream_transcript_variant
rs1000685106 -- 173,862,730(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for GAS5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GAS5-AS1 Gene

Disorders for GAS5-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GAS5-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GAS5-AS1

genes like me logo Genes that share disorders with GAS5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GAS5-AS1 Gene

Publications for GAS5-AS1 Gene

  1. LncRNA GAS5-AS1 inhibits myofibroblasts activities in oral submucous fibrosis. (PMID: 29249416) Lin CY … Yu CH (Journal of the Formosan Medical Association = Taiwan yi zhi 2018) 2 3 56
  2. Down-regulation of long non-coding RNA GAS5-AS1 and its prognostic and diagnostic significance in hepatocellular carcinoma. (PMID: 29660898) Wang Y … Tu J (Cancer biomarkers : section A of Disease markers 2018) 3 56
  3. A Functional Polymorphism rs145204276 in the Promoter of Long Noncoding RNA GAS5 Is Associated with an Increased Risk of Ischemic Stroke. (PMID: 30197169) Zheng Z … Han X (Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association 2018) 3 56

Products for GAS5-AS1 Gene

Sources for GAS5-AS1 Gene