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Aliases for GAS2L3 Gene

Aliases for GAS2L3 Gene

  • Growth Arrest Specific 2 Like 3 2 3 5
  • Growth Arrest-Specific Protein 2-Like 3 3 4
  • GAS2-Like Protein 3 3
  • G2L3 3

External Ids for GAS2L3 Gene

Previous GeneCards Identifiers for GAS2L3 Gene

  • GC12P099470
  • GC12P099471
  • GC12P100967
  • GC12P098028

Summaries for GAS2L3 Gene

GeneCards Summary for GAS2L3 Gene

GAS2L3 (Growth Arrest Specific 2 Like 3) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include actin binding and microtubule binding. An important paralog of this gene is GAS2.

UniProtKB/Swiss-Prot for GAS2L3 Gene

  • Cytoskeletal linker protein. May promote and stabilize the formation of the actin and microtubule network.

Additional gene information for GAS2L3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAS2L3 Gene

Genomics for GAS2L3 Gene

GeneHancer (GH) Regulatory Elements for GAS2L3 Gene

Promoters and enhancers for GAS2L3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I100572 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 558.5 +0.5 538 2.6 PKNOX1 CLOCK ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF213 FOS GAS2L3 PIGAP1
GH12I100593 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 556.1 +20.0 20040 0.6 SOX5 SOX13 TEAD1 HLF FEZF1 TEAD3 NFIL3 RCOR2 ZKSCAN8 BCL6 GAS2L3 GC12P100592 GC12P100618
GH12I100579 Promoter 0.5 EPDnew 550.8 +5.0 4994 0.1 GAS2L3 PIGAP1 ENSG00000257803
GH12I100576 Enhancer 1 Ensembl ENCODE 8.3 +3.2 3151 1.3 ATF1 INSM2 ZNF76 ZNF335 ZNF213 SCRT2 FOS ATF7 USF2 CEBPB ENSG00000257803 PIGAP1 GAS2L3
GH12I101051 Enhancer 1.1 Ensembl ENCODE 4.8 +478.8 478753 2.7 FEZF1 ZNF2 GLIS2 ZNF213 FOS SP3 TSHZ1 ZNF518A NFIL3 GLIS1 ACTR6 UTP20 ENSG00000257543 GAS2L3 SNX5P2 ENSG00000258007 ANO4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GAS2L3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the GAS2L3 gene promoter:

Genomic Locations for GAS2L3 Gene

Genomic Locations for GAS2L3 Gene
chr12:100,573,646-100,628,288
(GRCh38/hg38)
Size:
54,643 bases
Orientation:
Plus strand
chr12:100,967,461-101,022,064
(GRCh37/hg19)

Genomic View for GAS2L3 Gene

Genes around GAS2L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS2L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS2L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS2L3 Gene

Proteins for GAS2L3 Gene

  • Protein details for GAS2L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XJ1-GA2L3_HUMAN
    Recommended name:
    GAS2-like protein 3
    Protein Accession:
    Q86XJ1
    Secondary Accessions:
    • B2RCN2

    Protein attributes for GAS2L3 Gene

    Size:
    694 amino acids
    Molecular mass:
    75214 Da
    Quaternary structure:
    • Interacts (via CH domain) with F-actin. Interacts (via C terminus) with microtubules.

neXtProt entry for GAS2L3 Gene

Post-translational modifications for GAS2L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GAS2L3 Gene

Domains & Families for GAS2L3 Gene

Gene Families for GAS2L3 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for GAS2L3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86XJ1

UniProtKB/Swiss-Prot:

GA2L3_HUMAN :
  • The GAR domain modulates the binding strength to each cytoskeletal network.
  • Belongs to the GAS2 family.
Domain:
  • The GAR domain modulates the binding strength to each cytoskeletal network.
Family:
  • Belongs to the GAS2 family.
genes like me logo Genes that share domains with GAS2L3: view

Function for GAS2L3 Gene

Molecular function for GAS2L3 Gene

UniProtKB/Swiss-Prot Function:
Cytoskeletal linker protein. May promote and stabilize the formation of the actin and microtubule network.

Phenotypes From GWAS Catalog for GAS2L3 Gene

Gene Ontology (GO) - Molecular Function for GAS2L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IDA 21561867
GO:0005515 protein binding IPI 24571573
GO:0008017 microtubule binding IDA 21561867
genes like me logo Genes that share ontologies with GAS2L3: view

Phenotypes for GAS2L3 Gene

genes like me logo Genes that share phenotypes with GAS2L3: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GAS2L3 Gene

Localization for GAS2L3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GAS2L3 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Note=Localizes to microtubule and actin cytoskeletons.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GAS2L3 gene
Compartment Confidence
cytoskeleton 5
nucleus 3
cytosol 3

Gene Ontology (GO) - Cellular Components for GAS2L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005874 microtubule IEA --
GO:0015629 actin cytoskeleton IDA 21561867
GO:0015630 microtubule cytoskeleton IDA 21561867
genes like me logo Genes that share ontologies with GAS2L3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for GAS2L3 Gene

Pathways & Interactions for GAS2L3 Gene

SuperPathways for GAS2L3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GAS2L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000226 microtubule cytoskeleton organization IDA 21561867
GO:0030036 actin cytoskeleton organization IDA 21561867
genes like me logo Genes that share ontologies with GAS2L3: view

No data available for Pathways by source and SIGNOR curated interactions for GAS2L3 Gene

Drugs & Compounds for GAS2L3 Gene

No Compound Related Data Available

Transcripts for GAS2L3 Gene

Unigene Clusters for GAS2L3 Gene

Growth arrest-specific 2 like 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAS2L3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13 ^ 14
SP1: -
SP2: - - - - -
SP3: - -
SP4: - - - - -
SP5: -
SP6:

Relevant External Links for GAS2L3 Gene

GeneLoc Exon Structure for
GAS2L3
ECgene alternative splicing isoforms for
GAS2L3

Expression for GAS2L3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAS2L3 Gene

mRNA differential expression in normal tissues according to GTEx for GAS2L3 Gene

This gene is overexpressed in Nerve - Tibial (x22.1).

Protein differential expression in normal tissues from HIPED for GAS2L3 Gene

This gene is overexpressed in Serum (65.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for GAS2L3 Gene



Protein tissue co-expression partners for GAS2L3 Gene

NURSA nuclear receptor signaling pathways regulating expression of GAS2L3 Gene:

GAS2L3

SOURCE GeneReport for Unigene cluster for GAS2L3 Gene:

Hs.20575

mRNA Expression by UniProt/SwissProt for GAS2L3 Gene:

Q86XJ1-GA2L3_HUMAN
Tissue specificity: Expressed in the pancreas, heart, liver, placenta, brain, skeletal muscle, kidney and lung.
genes like me logo Genes that share expression patterns with GAS2L3: view

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS2L3 Gene

Orthologs for GAS2L3 Gene

This gene was present in the common ancestor of animals.

Orthologs for GAS2L3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GAS2L3 33 34
  • 99.57 (n)
cow
(Bos Taurus)
Mammalia GAS2L3 33 34
  • 87.28 (n)
mouse
(Mus musculus)
Mammalia Gas2l3 33 16 34
  • 80.59 (n)
rat
(Rattus norvegicus)
Mammalia Gas2l3 33
  • 79.7 (n)
dog
(Canis familiaris)
Mammalia GAS2L3 33 34
  • 76.19 (n)
oppossum
(Monodelphis domestica)
Mammalia GAS2L3 34
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GAS2L3 34
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves GAS2L3 33 34
  • 63.63 (n)
lizard
(Anolis carolinensis)
Reptilia GAS2L3 34
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gas2l3 33
  • 61.23 (n)
zebrafish
(Danio rerio)
Actinopterygii gas2l3 34
  • 47 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea D2096.11 34
  • 12 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4664 34
  • 48 (a)
OneToMany
Species where no ortholog for GAS2L3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GAS2L3 Gene

ENSEMBL:
Gene Tree for GAS2L3 (if available)
TreeFam:
Gene Tree for GAS2L3 (if available)

Paralogs for GAS2L3 Gene

Paralogs for GAS2L3 Gene

(1) SIMAP similar genes for GAS2L3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with GAS2L3: view

Variants for GAS2L3 Gene

Sequence variations from dbSNP and Humsavar for GAS2L3 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000024468 -- 100,610,772(+) AAAAAAA/AAAAAAAA intron_variant
rs1000075347 -- 100,621,928(+) T/C intron_variant
rs1000278444 -- 100,589,365(+) C/G genic_upstream_transcript_variant, intron_variant
rs1000307210 -- 100,573,425(+) C/T upstream_transcript_variant
rs1000426562 -- 100,622,242(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS2L3 Gene

Variant ID Type Subtype PubMed ID
esv28430 CNV gain 19812545
nsv478596 CNV novel sequence insertion 20440878

Variation tolerance for GAS2L3 Gene

Residual Variation Intolerance Score: 41.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.79; 47.43% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GAS2L3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS2L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GAS2L3 Gene

Disorders for GAS2L3 Gene

Additional Disease Information for GAS2L3

No disorders were found for GAS2L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAS2L3 Gene

Publications for GAS2L3 Gene

  1. Characterization of G2L3 (GAS2-like 3), a new microtubule- and actin-binding protein related to spectraplakins. (PMID: 21561867) Stroud MJ … Ballestrem C (The Journal of biological chemistry 2011) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. ABCE1 is a highly conserved RNA silencing suppressor. (PMID: 25659154) Kärblane K … Sarmiento C (PloS one 2015) 3 58
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58

Products for GAS2L3 Gene

Sources for GAS2L3 Gene

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