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Aliases for GAS1RR Gene

Subcategory (RNA class) for GAS1RR Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GAS1RR Gene

  • GAS1 Adjacent Regulatory RNA 2 3 5
  • LncRNA-Hh 3

External Ids for GAS1RR Gene

Summaries for GAS1RR Gene

GeneCards Summary for GAS1RR Gene

GAS1RR (GAS1 Adjacent Regulatory RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GAS1RR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAS1RR Gene

Genomics for GAS1RR Gene

GeneHancer (GH) Regulatory Elements for GAS1RR Gene

Promoters and enhancers for GAS1RR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J086731 Enhancer 1.4 Ensembl ENCODE dbSUPER 27.8 -216.2 -216195 2.6 ZSCAN21 SP7 MZF1 POLR2A ZNF488 ZBTB8A ZNF600 PRDM10 ZIC2 ZSCAN4 GC09M086730 NAA35 GAS1RR ENSG00000165121 ENSG00000231741 GAS1 LINC02834
GH09J087816 Enhancer 0.7 Ensembl 27.7 +867.9 867903 1.2 NFIB ZNF544 ZNF300 ZNF776 ZNF561 ZNF37A ZBTB44 ZNF491 ZNF662 ATF2 ELF2P3 GAS1RR CDK20 SPIN1 ENSG00000214888 HNRNPA1P14 GAS1 LOC100420576 FBP2P1
GH09J087285 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.4 +336.7 336703 1.2 NFIB SP7 PRDM1 POLR2A PKNOX1 ZNF600 PRDM10 ZNF629 ZNF501 ZXDB GAS1RR ENSG00000212421 LOC105376126 GC09P087365 GC09P087366 GC09P087367
GH09J087140 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +192.2 192165 1.1 ZNF384 ZSCAN21 SP7 MZF1 PKNOX1 ZNF488 ZBTB8A ZIC2 ZEB2 ZNF639 GAS1 LOC440173 GAS1RR C9orf170 GC09P087131
GH09J086982 Enhancer 0.9 ENCODE 16.5 +35.0 34960 3.2 ZSCAN21 SP7 PRDM1 MZF1 POLR2A PKNOX1 ZBTB8A ZNF600 PRDM10 ZEB2 GAS1RR GAS1 LOC440173 CDC20P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAS1RR on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAS1RR Gene

Genomic Locations for GAS1RR Gene
chr9:86,948,698-87,002,033
(GRCh38/hg38)
Size:
53,336 bases
Orientation:
Plus strand
chr9:89,562,801-89,616,948
(GRCh37/hg19)
Size:
54,148 bases
Orientation:
Plus strand

Genomic View for GAS1RR Gene

Genes around GAS1RR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAS1RR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAS1RR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAS1RR Gene

Proteins for GAS1RR Gene

Post-translational modifications for GAS1RR Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAS1RR Gene

Domains & Families for GAS1RR Gene

Gene Families for GAS1RR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GAS1RR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAS1RR Gene

Function for GAS1RR Gene

Phenotypes From GWAS Catalog for GAS1RR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAS1RR Gene

Localization for GAS1RR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAS1RR Gene

Pathways & Interactions for GAS1RR Gene

PathCards logo

SuperPathways for GAS1RR Gene

No Data Available

Interacting Proteins for GAS1RR Gene

Gene Ontology (GO) - Biological Process for GAS1RR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAS1RR Gene

Drugs & Compounds for GAS1RR Gene

No Compound Related Data Available

Transcripts for GAS1RR Gene

mRNA/cDNA for GAS1RR Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GAS1RR Gene

No ASD Table

Relevant External Links for GAS1RR Gene

GeneLoc Exon Structure for
GAS1RR
ECgene alternative splicing isoforms for
GAS1RR

Expression for GAS1RR Gene

NURSA nuclear receptor signaling pathways regulating expression of GAS1RR Gene:

GAS1RR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAS1RR Gene

Orthologs for GAS1RR Gene

Evolution for GAS1RR Gene

ENSEMBL:
Gene Tree for GAS1RR (if available)
TreeFam:
Gene Tree for GAS1RR (if available)

No data available for Orthologs for GAS1RR Gene

Paralogs for GAS1RR Gene

No data available for Paralogs for GAS1RR Gene

Variants for GAS1RR Gene

Sequence variations from dbSNP and Humsavar for GAS1RR Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000054468 -- 86,991,508(+) A/G intron_variant
rs1000066510 -- 86,980,215(+) C/T intron_variant
rs1000253568 -- 86,956,015(+) A/T intron_variant
rs1000289614 -- 86,997,855(+) C/G intron_variant
rs1000292540 -- 86,974,407(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GAS1RR Gene

Variant ID Type Subtype PubMed ID
dgv1261e201 CNV deletion 23290073
esv1694845 CNV insertion 17803354
esv2233205 CNV deletion 18987734
esv24034 CNV loss 19812545
esv2738700 CNV deletion 23290073
esv4644 CNV loss 18987735
esv994498 CNV insertion 20482838
nsv471887 CNV novel sequence insertion 20440878
nsv474993 CNV novel sequence insertion 20440878
nsv509304 CNV insertion 20534489
nsv6597 CNV insertion 18451855

Additional Variant Information for GAS1RR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAS1RR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GAS1RR Gene

Disorders for GAS1RR Gene

Additional Disease Information for GAS1RR

No disorders were found for GAS1RR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAS1RR Gene

Publications for GAS1RR Gene

  1. LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway. (PMID: 26418365) Zhou M … Liu M (Stem cells (Dayton, Ohio) 2016) 2 3 58
  2. Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study. (PMID: 21901158) Irvin MR … Arnett DK (PloS one 2011) 3 58

Products for GAS1RR Gene

Sources for GAS1RR Gene

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