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Aliases for GARSP1 Gene

Subcategory (RNA class) for GARSP1 Gene

lncRNA

Aliases for GARSP1 Gene

  • Glycyl-TRNA Synthetase Pseudogene 1 2 3 5

External Ids for GARSP1 Gene

ORGUL Members for GARSP1 Gene

Summaries for GARSP1 Gene

GeneCards Summary for GARSP1 Gene

GARSP1 (Glycyl-TRNA Synthetase Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for GARSP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GARSP1 Gene

Genomics for GARSP1 Gene

GeneHancer (GH) Regulatory Elements for GARSP1 Gene

Promoters and enhancers for GARSP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J055551 Enhancer 0.3 Ensembl 600.7 +0.1 149 0.2 CREB1 GARSP1 GC17P055552 RNU6-1249P PCTP LOC105371833 ENSG00000236319 SMIM36
GH17J055552 Enhancer 0.2 Ensembl 600.7 -0.8 -751 0.4 GARSP1 RNU6-1249P GC17P055552 LOC105371833 ENSG00000236319
GH17J055526 Enhancer 0.9 Ensembl ENCODE 0.3 +24.4 24449 1.6 CC2D1A CTCF RAD21 PKNOX1 ARID2 IKZF1 GATAD2A ZNF143 REST TRIM22 STXBP4 SMIM36 GARSP1 LOC105371833 ENSG00000236319
GH17J055540 Enhancer 0.6 Ensembl 0.4 +11.0 10978 0.9 MAFK SP1 REST FOXA2 MAX JUND EP300 YY1 FOSL2 HNF4A TMEM100 GARSP1 LOC105371833 ENSG00000236319 SMIM36
GH17J055514 Enhancer 0.8 ENCODE 0.3 +37.4 37445 0.2 ELF3 CTCF ZNF384 RAD21 KAT8 ARID2 GATAD2A ZNF143 REST RXRB MMD TMEM100 SMIM36 GARSP1 LOC105371833
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GARSP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GARSP1 Gene

Genomic Locations for GARSP1 Gene
chr17:55,550,931-55,551,650
(GRCh38/hg38)
Size:
720 bases
Orientation:
Minus strand
chr17:53,628,292-53,629,022
(GRCh37/hg19)
Size:
731 bases
Orientation:
Minus strand

Genomic View for GARSP1 Gene

Genes around GARSP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GARSP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GARSP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GARSP1 Gene

Proteins for GARSP1 Gene

Post-translational modifications for GARSP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GARSP1 Gene

Domains & Families for GARSP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GARSP1 Gene

Function for GARSP1 Gene

Phenotypes From GWAS Catalog for GARSP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GARSP1 Gene

Localization for GARSP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GARSP1 Gene

Pathways & Interactions for GARSP1 Gene

PathCards logo

SuperPathways for GARSP1 Gene

No Data Available

Interacting Proteins for GARSP1 Gene

Gene Ontology (GO) - Biological Process for GARSP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GARSP1 Gene

Drugs & Compounds for GARSP1 Gene

No Compound Related Data Available

Transcripts for GARSP1 Gene

mRNA/cDNA for GARSP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GARSP1 Gene

No ASD Table

Relevant External Links for GARSP1 Gene

GeneLoc Exon Structure for
GARSP1
ECgene alternative splicing isoforms for
GARSP1

Expression for GARSP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GARSP1 Gene:

GARSP1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GARSP1 Gene

Orthologs for GARSP1 Gene

Evolution for GARSP1 Gene

ENSEMBL:
Gene Tree for GARSP1 (if available)
TreeFam:
Gene Tree for GARSP1 (if available)

No data available for Orthologs for GARSP1 Gene

Paralogs for GARSP1 Gene

No data available for Paralogs for GARSP1 Gene

Variants for GARSP1 Gene

Additional Variant Information for GARSP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GARSP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GARSP1 Gene

Disorders for GARSP1 Gene

No disorders were found for GARSP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GARSP1 Gene

Publications for GARSP1 Gene

No publications were found for GARSP1 Gene.

No data available for External Links for GARSP1 Gene

Products for GARSP1 Gene

Sources for GARSP1 Gene

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