Aliases for GARS1-DT Gene

Subcategory (RNA class) for GARS1-DT Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for GARS1-DT Gene

  • GARS1 Divergent Transcript 2 3 5
  • GARS Divergent Transcript 2 3
  • GARS-DT 2 3
  • NONHSAG047260.2 91
  • HSALNG0057010 164
  • HSALNG0056996 164
  • AC005154.6 2
  • AC005154.1 2
  • Lnc-GGCT-1 165
  • Lnc-NOD1-1 165
  • GARS1-DT 5

External Ids for GARS1-DT Gene

Previous HGNC Symbols for GARS1-DT Gene

  • GARS-DT

Previous GeneCards Identifiers for GARS1-DT Gene

  • GC07M030549

Summaries for GARS1-DT Gene

GeneCards Summary for GARS1-DT Gene

GARS1-DT (GARS1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GARS1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GARS1-DT Gene

Genomics for GARS1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GARS1-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GARS1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GARS1-DT Gene

Genomic Locations for GARS1-DT Gene
chr7:30,384,230-31,211,456
(GRCh38/hg38)
Size:
827,227 bases
Orientation:
Minus strand
chr7:30,555,925-30,634,425
(GRCh37/hg19)
Size:
78,501 bases
Orientation:
Minus strand

Genomic View for GARS1-DT Gene

Genes around GARS1-DT on UCSC Golden Path with GeneCards custom track
GARS1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GARS1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GARS1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GARS1-DT Gene

Proteins for GARS1-DT Gene

Post-translational modifications for GARS1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GARS1-DT Gene

Domains & Families for GARS1-DT Gene

Gene Families for GARS1-DT Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
genes like me logo Genes that share domains with GARS1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GARS1-DT Gene

Function for GARS1-DT Gene

Phenotypes From GWAS Catalog for GARS1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GARS1-DT Gene

Localization for GARS1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GARS1-DT Gene

Pathways & Interactions for GARS1-DT Gene

PathCards logo

SuperPathways for GARS1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for GARS1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GARS1-DT Gene

Drugs & Compounds for GARS1-DT Gene

No Compound Related Data Available

Transcripts for GARS1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GARS1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D6DC_9606 lncRNA 3871 5

HGNC: 48951,

RefSeq: NR_038889,

LncBook: HSALNT0120721,

LNCipedia: lnc-GGCT-1:34,

NONCODE: NONHSAT119889.2,

URS00008BE535_9606 lncRNA 1217 4

Ensembl: ENST00000434399 (view in UCSC) ,

LncBook: HSALNT0120702,

LNCipedia: lnc-GGCT-1:21,

NONCODE: NONHSAT119872.2,

URS00008B73DB_9606 lncRNA 999 4

Ensembl: ENST00000578293 (view in UCSC) ,

LncBook: HSALNT0120704,

LNCipedia: lnc-GGCT-1:46,

NONCODE: NONHSAT119875.2,

URS00008B475B_9606 lncRNA 926 4

Ensembl: ENST00000580902 (view in UCSC) ,

LncBook: HSALNT0120708,

LNCipedia: lnc-GGCT-1:20,

NONCODE: NONHSAT119877.2,

URS00008B8EC0_9606 lncRNA 755 4

Ensembl: ENST00000579174 (view in UCSC) ,

LncBook: HSALNT0120751,

LNCipedia: lnc-GGCT-1:2,

NONCODE: NONHSAT119913.2,

GARS1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GARS1-DT Gene

10 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GARS1-DT Gene

No ASD Table

Relevant External Links for GARS1-DT Gene

GeneLoc Exon Structure for
GARS1-DT

Expression for GARS1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GARS1-DT

SOURCE GeneReport for Unigene cluster for GARS1-DT Gene:

Hs.561708
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GARS1-DT Gene

Orthologs for GARS1-DT Gene

Evolution for GARS1-DT Gene

ENSEMBL:
Gene Tree for GARS1-DT (if available)
TreeFam:
Gene Tree for GARS1-DT (if available)

No data available for Orthologs for GARS1-DT Gene

Paralogs for GARS1-DT Gene

No data available for Paralogs for GARS1-DT Gene

Variants for GARS1-DT Gene

Additional dbSNP identifiers (rs#s) for GARS1-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for GARS1-DT Gene

Variant ID Type Subtype PubMed ID
esv1382198 CNV deletion 17803354
esv2734197 CNV deletion 23290073
esv2734198 CNV deletion 23290073
nsv1024458 CNV loss 25217958
nsv1068321 OTHER inversion 25765185
nsv1148830 OTHER inversion 26484159
nsv1150875 CNV deletion 26484159
nsv436557 CNV deletion 17901297
nsv966770 CNV duplication 23825009

Additional Variant Information for GARS1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GARS1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GARS1-DT Gene

Disorders for GARS1-DT Gene

Additional Disease Information for GARS1-DT

No disorders were found for GARS1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GARS1-DT Gene

Publications for GARS1-DT Gene

  1. A non-coding CRHR2 SNP rs255105, a cis-eQTL for a downstream lincRNA AC005154.6, is associated with heroin addiction. (PMID: 29953524) Levran O … Kreek MJ (PloS one 2018) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for GARS1-DT Gene

Sources for GARS1-DT Gene