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Aliases for GARS-DT Gene

Subcategory (RNA class) for GARS-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GARS-DT Gene

  • GARS Divergent Transcript 2 3 5

External Ids for GARS-DT Gene

Summaries for GARS-DT Gene

GeneCards Summary for GARS-DT Gene

GARS-DT (GARS Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GARS-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GARS-DT Gene

Genomics for GARS-DT Gene

GeneHancer (GH) Regulatory Elements for GARS-DT Gene

Promoters and enhancers for GARS-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J030593 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 672.4 -1.1 -1073 6.2 ZNF652 SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 CEBPG GARS-DT GARS GC07M030589 ENSG00000244480 PLEKHA8 ZNRF2P2 FKBP14 ENSG00000264520 ENSG00000235859 CRHR2
GH07J030501 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 52.4 +90.9 90874 4.1 HDGF ZFX SP1 ZKSCAN8 NKRF POLR2A ZNF121 CEBPG FOS TFE3 GGCT GARS-DT ENSG00000226874 ENSG00000235859 ENSG00000263683 NOD1 ENSG00000281039
GH07J030548 Promoter/Enhancer 1.4 Ensembl ENCODE 54.4 +44.4 44427 3.8 CTCF NFIB BACH1 MAFK MYC PRDM1 ZNF639 RAD21 IKZF1 CREB1 ENSG00000281039 ENSG00000263683 GARS-DT NOD1 GARS
GH07J030562 Enhancer 1 Ensembl ENCODE 57.7 +31.3 31308 3.4 CC2D1A ELF3 CTCF RAD21 ARID2 IKZF1 ZNF600 REST TRIM22 IRF2 GARS-DT NOD1 PIR52881 ENSG00000281039
GH07J030520 Enhancer 1 Ensembl ENCODE 50.6 +70.8 70802 8 CBFA2T2 ZNF687 TRIM24 HNF1A SMARCA4 IKZF1 DPF2 BACH1 IKZF2 PHF21A ENSG00000264520 ENSG00000244480 GARS-DT NOD1 FKBP14 PLEKHA8 LOC100287825 GGCT ENSG00000281039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GARS-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for GARS-DT Gene

Genomic Locations for GARS-DT Gene
chr7:30,516,309-30,594,809
(GRCh38/hg38)
Size:
78,501 bases
Orientation:
Minus strand
chr7:30,555,925-30,634,425
(GRCh37/hg19)
Size:
78,501 bases
Orientation:
Minus strand

Genomic View for GARS-DT Gene

Genes around GARS-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GARS-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GARS-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GARS-DT Gene

Proteins for GARS-DT Gene

Post-translational modifications for GARS-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GARS-DT Gene

Domains & Families for GARS-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GARS-DT Gene

Function for GARS-DT Gene

Phenotypes From GWAS Catalog for GARS-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GARS-DT Gene

Localization for GARS-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GARS-DT Gene

Pathways & Interactions for GARS-DT Gene

PathCards logo

SuperPathways for GARS-DT Gene

No Data Available

Interacting Proteins for GARS-DT Gene

Gene Ontology (GO) - Biological Process for GARS-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GARS-DT Gene

Drugs & Compounds for GARS-DT Gene

No Compound Related Data Available

Transcripts for GARS-DT Gene

mRNA/cDNA for GARS-DT Gene

(11) Additional mRNA sequences :
(150) Selected AceView cDNA sequences:
(32) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for GARS-DT Gene

Uncharacterized LOC401320:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GARS-DT Gene

No ASD Table

Relevant External Links for GARS-DT Gene

GeneLoc Exon Structure for
GARS-DT
ECgene alternative splicing isoforms for
GARS-DT

Expression for GARS-DT Gene

SOURCE GeneReport for Unigene cluster for GARS-DT Gene:

Hs.561708
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GARS-DT Gene

Orthologs for GARS-DT Gene

Evolution for GARS-DT Gene

ENSEMBL:
Gene Tree for GARS-DT (if available)
TreeFam:
Gene Tree for GARS-DT (if available)

No data available for Orthologs for GARS-DT Gene

Paralogs for GARS-DT Gene

No data available for Paralogs for GARS-DT Gene

Variants for GARS-DT Gene

Sequence variations from dbSNP and Humsavar for GARS-DT Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000069165 -- 30,559,460(-) G/A intron_variant
rs1000140945 -- 30,550,995(-) G/A intron_variant
rs1000144889 -- 30,567,615(-) C/A intron_variant
rs1000195186 -- 30,550,819(-) T/C intron_variant
rs1000256042 -- 30,577,042(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GARS-DT Gene

Variant ID Type Subtype PubMed ID
esv1382198 CNV deletion 17803354
esv2734197 CNV deletion 23290073
esv2734198 CNV deletion 23290073
nsv1024458 CNV loss 25217958
nsv1068321 OTHER inversion 25765185
nsv1148830 OTHER inversion 26484159
nsv1150875 CNV deletion 26484159
nsv436557 CNV deletion 17901297
nsv966770 CNV duplication 23825009

Additional Variant Information for GARS-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GARS-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GARS-DT Gene

Disorders for GARS-DT Gene

Additional Disease Information for GARS-DT

No disorders were found for GARS-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GARS-DT Gene

Publications for GARS-DT Gene

  1. A non-coding CRHR2 SNP rs255105, a cis-eQTL for a downstream lincRNA AC005154.6, is associated with heroin addiction. (PMID: 29953524) Levran O … Kreek MJ (PloS one 2018) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GARS-DT Gene

Sources for GARS-DT Gene

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