Aliases for GARS-DT Gene

Subcategory (RNA class) for GARS-DT Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for GARS-DT Gene

  • GARS Divergent Transcript 2 3 5
  • HSALNG0057010 169
  • NONHSAG047260 94
  • Lnc-GGCT-1 170
  • GARS-DT 2

External Ids for GARS-DT Gene

Summaries for GARS-DT Gene

GeneCards Summary for GARS-DT Gene

GARS-DT (GARS Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GARS-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GARS-DT Gene

Genomics for GARS-DT Gene

GeneHancer (GH) Regulatory Elements for GARS-DT Gene

Promoters and enhancers for GARS-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GARS-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for GARS-DT Gene

Genomic Locations for GARS-DT Gene
chr7:30,510,689-30,595,286
(GRCh38/hg38)
Size:
84,598 bases
Orientation:
Minus strand
chr7:30,555,925-30,634,425
(GRCh37/hg19)
Size:
78,501 bases
Orientation:
Minus strand

Genomic View for GARS-DT Gene

Genes around GARS-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GARS-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GARS-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GARS-DT Gene

Proteins for GARS-DT Gene

Post-translational modifications for GARS-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GARS-DT Gene

Domains & Families for GARS-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GARS-DT Gene

Function for GARS-DT Gene

Phenotypes From GWAS Catalog for GARS-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GARS-DT Gene

Localization for GARS-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GARS-DT Gene

Pathways & Interactions for GARS-DT Gene

PathCards logo

SuperPathways for GARS-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for GARS-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GARS-DT Gene

Drugs & Compounds for GARS-DT Gene

No Compound Related Data Available

Transcripts for GARS-DT Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GARS-DT Gene

No ASD Table

Relevant External Links for GARS-DT Gene

GeneLoc Exon Structure for
GARS-DT
ECgene alternative splicing isoforms for
GARS-DT

Expression for GARS-DT Gene

SOURCE GeneReport for Unigene cluster for GARS-DT Gene:

Hs.561708
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GARS-DT Gene

Orthologs for GARS-DT Gene

Evolution for GARS-DT Gene

ENSEMBL:
Gene Tree for GARS-DT (if available)
TreeFam:
Gene Tree for GARS-DT (if available)

No data available for Orthologs for GARS-DT Gene

Paralogs for GARS-DT Gene

No data available for Paralogs for GARS-DT Gene

Variants for GARS-DT Gene

Sequence variations from dbSNP and Humsavar for GARS-DT Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000069165 -- 30,559,460(-) G/A intron_variant
rs1000140945 -- 30,550,995(-) G/A intron_variant
rs1000144889 -- 30,567,615(-) C/A intron_variant
rs1000195186 -- 30,550,819(-) T/C intron_variant
rs1000256042 -- 30,577,042(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GARS-DT Gene

Variant ID Type Subtype PubMed ID
esv1382198 CNV deletion 17803354
esv2734197 CNV deletion 23290073
esv2734198 CNV deletion 23290073
nsv1024458 CNV loss 25217958
nsv1068321 OTHER inversion 25765185
nsv1148830 OTHER inversion 26484159
nsv1150875 CNV deletion 26484159
nsv436557 CNV deletion 17901297
nsv966770 CNV duplication 23825009

Additional Variant Information for GARS-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GARS-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GARS-DT Gene

Disorders for GARS-DT Gene

Additional Disease Information for GARS-DT

No disorders were found for GARS-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GARS-DT Gene

Publications for GARS-DT Gene

  1. A non-coding CRHR2 SNP rs255105, a cis-eQTL for a downstream lincRNA AC005154.6, is associated with heroin addiction. (PMID: 29953524) Levran O … Kreek MJ (PloS one 2018) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for GARS-DT Gene

Sources for GARS-DT Gene