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Aliases for GAPLINC Gene
Subcategory (RNA class) for GAPLINC Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for GAPLINC Gene
External Ids for GAPLINC Gene
- HGNC: 51308
- Entrez Gene: 100505592
- Ensembl: ENSG00000266835
Previous HGNC Symbols for GAPLINC Gene
- LINC01540
Summaries for GAPLINC Gene
GeneCards Summary for GAPLINC Gene
GAPLINC (Gastric Adenocarcinoma Associated, Positive CD44 Regulator, Long Intergenic Non-Coding RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GAPLINC include Glioma Susceptibility 1 and Gastric Cancer.
Additional gene information for GAPLINC Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GAPLINC Gene
Genomics for GAPLINC Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for GAPLINC Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around GAPLINC on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for GAPLINC Gene
Genomic Locations for GAPLINC Gene
- chr18:3,466,250-3,487,048
- (GRCh38/hg38)
- Size:
- 20,799 bases
- Orientation:
- Plus strand
- chr18:3,466,248-3,478,976
- (GRCh37/hg19)
- Size:
- 12,729 bases
- Orientation:
- Plus strand
Genomic View for GAPLINC Gene
Genes around GAPLINC on UCSC Golden Path with GeneCards custom track
GAPLINC in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18p11.31 by HGNC
- 18p11.31 by Entrez Gene
- 18p11.31 by Ensembl
GAPLINC Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for GAPLINC Gene
Proteins for GAPLINC Gene
Post-translational modifications for GAPLINC Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPLINC
- Origene Custom Protein Services for GAPLINC
No data available for DME Specific Peptides for GAPLINC Gene
Domains & Families for GAPLINC Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GAPLINC Gene
Function for GAPLINC Gene
Phenotypes From GWAS Catalog for GAPLINC Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPLINC Gene
Localization for GAPLINC Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPLINC Gene
Transcripts for GAPLINC Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for GAPLINC Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000011244D_9606 | lncRNA | 643 | 4 |
Ensembl: ENST00000579007 (view in UCSC) , LncBook: HSALNT0247164, LNCipedia: GAPLINC:8, NONCODE: NONHSAT056995.2, |
| URS000039C7FE_9606 | lncRNA | 613 | 4 |
Ensembl: ENST00000581029 (view in UCSC) , LncBook: HSALNT0247154, LNCipedia: GAPLINC:2, NONCODE: NONHSAT056992.2, |
| URS0000063710_9606 | lncRNA | 450 | 3 |
Ensembl: ENST00000581442 (view in UCSC) , LncBook: HSALNT0247155, LNCipedia: GAPLINC:1, |
| URS000075DC77_9606 | lncRNA | 501 | 2 |
HGNC: 51308, RefSeq: NR_110429, |
| URS0000EF1743_9606 | lncRNA | 623 | 1 |
Ensembl: ENST00000578664 (view in UCSC) , |
GAPLINC in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for GAPLINC Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for GAPLINC
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for GAPLINC Gene
- GeneLoc Exon Structure for
- GAPLINC
Expression for GAPLINC Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GAPLINC
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPLINC Gene
Orthologs for GAPLINC Gene
No data available for Orthologs for GAPLINC Gene
Paralogs for GAPLINC Gene
No data available for Paralogs for GAPLINC Gene
Variants for GAPLINC Gene
Additional Variant Information for GAPLINC Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- GAPLINC
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPLINC Gene
Disorders for GAPLINC Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| glioma susceptibility 1 |
|
|
| gastric cancer |
|
|
| colorectal cancer |
|
|
| gastric adenocarcinoma |
|
|
Search GAPLINC in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for GAPLINC
No data available for UniProtKB/Swiss-Prot and Genatlas for GAPLINC Gene
Publications for GAPLINC Gene
- Hypoxia Promotes Gastric Cancer Malignancy Partly through the HIF-1α Dependent Transcriptional Activation of the Long Non-coding RNA GAPLINC. (PMID: 27729869) Liu L … Tian Z (Frontiers in physiology 2016) 2 3
- Long Non-Coding RNA ucoo2kmd.1 Regulates CD44-Dependent Cell Growth by Competing for miR-211-3p in Colorectal Cancer. (PMID: 26974151) Wu X … Zhu H (PloS one 2016) 2 3
- Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer. (PMID: 25277524) Hu Y … Fang JY (Cancer research 2014) 2 3
- LncRNA GAPLINC promotes the growth and metastasis of glioblastoma by sponging miR-331-3p. (PMID: 30657584) Chen HH … Wang SJ (European review for medical and pharmacological sciences 2019) 3
- Clinical usefulness of gastric adenocarcinoma predictive long intergenic noncoding RNA in human malignancies: A meta-analysis. (PMID: 30904361) Liu W … Zhang C (Pathology, research and practice 2019) 3
ExternalLinks
Products for GAPLINC Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPLINC
- Origene Custom Protein Services for GAPLINC
- Browse OriGene Inhibitory RNA Products For GAPLINC
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for GAPLINC
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For GAPLINC
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for GAPLINC
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for GAPLINC
- Search GeneCopoeia for miRNA 3'UTR Target clone products for GAPLINC
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for GAPLINC
Sources for GAPLINC Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB