GAPDHP60 Gene (Pseudogene)

Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 60

GC04P087207
GIFtS:
7
See more...

Aliases for GAPDHP60 Gene

Aliases for GAPDHP60 Gene

  • Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 60 2 3 5
  • Glyceraldehyde-3-Phosphate Dehydrogenase-Like 4, Pseudogene 2 3
  • Glyceraldehyde-3-Phosphate Dehydrogenase-Like 4 2
  • GAPDHP60 5
  • GAPDHL4 3
  • GAPDL4 3

External Ids for GAPDHP60 Gene

Previous HGNC Symbols for GAPDHP60 Gene

  • GAPDL4
  • GAPDHL4

Previous GeneCards Identifiers for GAPDHP60 Gene

  • GC04P088129

Summaries for GAPDHP60 Gene

GeneCards Summary for GAPDHP60 Gene

GAPDHP60 (Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 60) is a Pseudogene.

Additional gene information for GAPDHP60 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GAPDHP60 Gene

Genomics for GAPDHP60 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for GAPDHP60 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J087207 Enhancer 0.2 FANTOM5 600.7 +0.2 168 0.3 GAPDHP60 HSD17B13 piR-57138-039 KLHL8 ENSG00000285458
GH04J087219 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +13.2 13180 2.8 GATAD2A CTCF ZBTB33 PRDM10 ZNF629 SIX5 IKZF1 ZNF692 POLR2A RCOR2 KLHL8 HSD17B13 piR-57138-039 GAPDHP60 lnc-KLHL8-1 ENSG00000285458
GH04J087209 Enhancer 0.8 FANTOM5 ENCODE 0.7 +2.8 2772 0.9 POLR2A CEBPB GABPA YY1 ELF1 CEBPG SPI1 ZNF384 ZNF18 ETV1 KLHL8 HSD17B13 AFF1 HSD17B11 GAPDHP60 piR-57138-039 ENSG00000285458
GH04J087187 Enhancer 0.7 Ensembl 0.4 -17.8 -17830 0.4 CREB1 FOXA1 GABPA SP1 SCRT2 SP2 FOXA2 BCL11A YY1 PKNOX1 GAPDHP60 LOC100419572 KLHL8 ENSG00000285458
GH04J087192 Enhancer 0.4 Ensembl 0.4 -14.4 -14420 0.4 PRDM10 SCRT2 JUND ZNF133 HSD17B13 GAPDHP60 LOC100419572 KLHL8 ENSG00000285458
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAPDHP60 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GAPDHP60 Gene

Genomic Locations for GAPDHP60 Gene
chr4:87,207,020-87,208,290
(GRCh38/hg38)
Size:
1,271 bases
Orientation:
Plus strand
chr4:88,128,168-88,129,441
(GRCh37/hg19)
Size:
1,274 bases
Orientation:
Plus strand

Genomic View for GAPDHP60 Gene

Genes around GAPDHP60 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAPDHP60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAPDHP60 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GAPDHP60 Gene

Proteins for GAPDHP60 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GAPDHP60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAPDHP60 Gene

Domains & Families for GAPDHP60 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GAPDHP60 Gene

Function for GAPDHP60 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP60 Gene

Localization for GAPDHP60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP60 Gene

Pathways & Interactions for GAPDHP60 Gene

PathCards logo

SuperPathways for GAPDHP60 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GAPDHP60 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GAPDHP60 Gene

Drugs & Compounds for GAPDHP60 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GAPDHP60 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for GAPDHP60 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAPDHP60 Gene

No ASD Table

Relevant External Links for GAPDHP60 Gene

GeneLoc Exon Structure for
GAPDHP60

Expression for GAPDHP60 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GAPDHP60 Gene

mRNA expression in normal human tissues for GAPDHP60 Gene
mRNA expression by GTEx for GAPDHP60 Gene
genes like me logo Genes that share expression patterns with GAPDHP60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP60 Gene

Orthologs for GAPDHP60 Gene

Evolution for GAPDHP60 Gene

ENSEMBL:
Gene Tree for GAPDHP60 (if available)
TreeFam:
Gene Tree for GAPDHP60 (if available)

No data available for Orthologs for GAPDHP60 Gene

Paralogs for GAPDHP60 Gene

No data available for Paralogs for GAPDHP60 Gene

Variants for GAPDHP60 Gene

Additional Variant Information for GAPDHP60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAPDHP60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP60 Gene

Disorders for GAPDHP60 Gene

No disorders were found for GAPDHP60 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAPDHP60 Gene

Publications for GAPDHP60 Gene

  1. Members of the human glyceraldehyde-3-phosphate dehydrogenase-related gene family map to dispersed chromosomal locations. (PMID: 2793178) Benham FJ … Povey S (Genomics 1989) 2 3
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

ExternalLinks

View latest publications for GAPDHP60 gene in Mastermind

Products for GAPDHP60 Gene

Sources for GAPDHP60 Gene