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Aliases for GAPDHP60 Gene
Aliases for GAPDHP60 Gene
External Ids for GAPDHP60 Gene
- HGNC: 4153
- NCBI Entrez Gene: 2601
- Ensembl: ENSG00000248180
Previous HGNC Symbols for GAPDHP60 Gene
- GAPDL4
- GAPDHL4
Previous GeneCards Identifiers for GAPDHP60 Gene
- GC04P088129
Summaries for GAPDHP60 Gene
GeneCards Summary for GAPDHP60 Gene
GAPDHP60 (Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 60) is a Pseudogene.
Additional gene information for GAPDHP60 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GAPDHP60 Gene
Genomics for GAPDHP60 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for GAPDHP60 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J087207 | Enhancer | 0.2 | FANTOM5 | 250.7 | +0.2 | 168 | 0.3 | GAPDHP60 HSD17B13 piR-57138-039 KLHL8 ENSG00000285458 | ||
| GH04J087219 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 0.4 | +13.2 | 13180 | 2.8 | ZSCAN16 CHD2 TBP ZBTB10 MXD4 SIX5 NR2C1 MNT IKZF1 SMAD5 | KLHL8 HSD17B13 piR-57138-039 GAPDHP60 lnc-KLHL8-1 ENSG00000285458 | |
| GH04J087209 | Enhancer | 0.8 | FANTOM5 ENCODE | 0.7 | +2.8 | 2772 | 0.9 | GABPA ELF1 SPI1 POLR2A ZNF384 CEBPG MEIS2 ZNF18 CEBPB GABPB1 | KLHL8 HSD17B13 AFF1 HSD17B11 GAPDHP60 piR-57138-039 ENSG00000285458 | |
| GH04J087187 | Enhancer | 0.7 | Ensembl | 0.4 | -18.0 | -18046 | 0.7 | GABPA FOXA2 RXRA SP2 PRDM6 ZBTB40 SPI1 FOXA1 ZNF24 JUND | HSD17B13 GAPDHP60 LOC100419572 KLHL8 ENSG00000285458 | |
| GH04J087192 | Enhancer | 0.4 | Ensembl | 0.4 | -14.4 | -14420 | 0.4 | JUND ZNF133 PRDM10 | HSD17B13 GAPDHP60 LOC100419572 KLHL8 ENSG00000285458 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around GAPDHP60 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for GAPDHP60 Gene
Latest Assembly
- chr4:87,207,020-87,208,290
- (GRCh38/hg38)
- Size:
- 1,271 bases
- Orientation:
- Plus strand
Previous Assembly
- chr4:88,128,172-88,129,442
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,271 bases
- Orientation:
- Plus strand
- chr4:88,128,244-88,129,238
- (GRCh37/hg19 by Ensembl)
- Size:
- 995 bases
- Orientation:
- Plus strand
Genomic View for GAPDHP60 Gene
Genes around GAPDHP60 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q22.1 by HGNC
- 4q22.1 by Entrez Gene
- 4q22.1 by Ensembl
GAPDHP60 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for GAPDHP60 Gene
Proteins for GAPDHP60 Gene
Post-translational modifications for GAPDHP60 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPDHP60
- Origene Custom Protein Services for GAPDHP60
Assay products for research
No data available for DME Specific Peptides for GAPDHP60 Gene
Domains & Families for GAPDHP60 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GAPDHP60 Gene
Function for GAPDHP60 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for GAPDHP60 - Starting at $85 >
- * GAPDHP60 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for GAPDHP60
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP60 Gene
Localization for GAPDHP60 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP60 Gene
Transcripts for GAPDHP60 Gene
mRNA/cDNA for GAPDHP60 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000513846 995 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for GAPDHP60 - Starting at $85 >
- * GAPDHP60 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for GAPDHP60
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for GAPDHP60 Gene
- GeneLoc Exon Structure for
- GAPDHP60
Expression for GAPDHP60 Gene
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP60 Gene
Orthologs for GAPDHP60 Gene
No data available for Orthologs for GAPDHP60 Gene
Paralogs for GAPDHP60 Gene
No data available for Paralogs for GAPDHP60 Gene
Variants for GAPDHP60 Gene
Additional Variant Information for GAPDHP60 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- GAPDHP60
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP60 Gene
Disorders for GAPDHP60 Gene
No disorders were found for GAPDHP60 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAPDHP60 Gene
Publications for GAPDHP60 Gene
- Members of the human glyceraldehyde-3-phosphate dehydrogenase-related gene family map to dispersed chromosomal locations. (PMID: 2793178) Benham FJ … Povey S (Genomics 1989) 2 3
- Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3
ExternalLinks
Products for GAPDHP60 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPDHP60
- Origene Custom Protein Services for GAPDHP60
- Browse OriGene Inhibitory RNA Products For GAPDHP60
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for GAPDHP60
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For GAPDHP60
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for GAPDHP60
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for GAPDHP60
- Search GeneCopoeia for miRNA 3'UTR Target clone products for GAPDHP60
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for GAPDHP60
Sources for GAPDHP60 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB