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Aliases for GAPDHP54 Gene

Subcategory (RNA class) for GAPDHP54 Gene

lncRNA

Aliases for GAPDHP54 Gene

  • Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 54 2 3 5

External Ids for GAPDHP54 Gene

ORGUL Members for GAPDHP54 Gene

Previous GeneCards Identifiers for GAPDHP54 Gene

  • GC20U900586
  • GC20P042369
  • GC20P045627

Summaries for GAPDHP54 Gene

GeneCards Summary for GAPDHP54 Gene

GAPDHP54 (Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 54) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for GAPDHP54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAPDHP54 Gene

Genomics for GAPDHP54 Gene

GeneHancer (GH) Regulatory Elements for GAPDHP54 Gene

Promoters and enhancers for GAPDHP54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J046996 Enhancer 0.8 Ensembl dbSUPER 600.7 +1.0 1005 1.6 ZNF148 CEBPA ESRRA ZKSCAN1 CEBPG CEBPB TAL1 ELF1 CBFA2T3 GAPDHP54 CDH22 ENSG00000239783 EYA2
GH20J046995 Enhancer 0.9 Ensembl dbSUPER 0.7 -2.1 -2095 0.6 IKZF1 BACH1 IKZF2 POLR2A ZNF24 EZH2 DPF2 BCL11A NR2F1 NBN GAPDHP54 GC20P046944 EYA2
GH20J046989 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -5.9 -5895 4.2 MAFK SMARCA4 DPF2 ATF1 PKNOX1 LEF1 HDAC1 ZNF24 ZNF316 EP300 EYA2 GAPDHP54 GC20P046944
GH20J046994 Enhancer 0.7 dbSUPER 0.7 -3.1 -3112 1.1 ZNF687 MLLT1 IKZF1 IKZF2 PKNOX1 ZSCAN29 DPF2 ELF1 BCL11A NR2F1 GAPDHP54 GC20P046944 EYA2
GH20J046971 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -26.2 -26213 0.8 SP1 SIX5 CBFA2T2 TRIM24 ELF1 POLR2A FOSL2 CREB1 CEBPG GMEB1 NCOA5 ZNF335 EYA2 CD40 TP53RK SLC35C2 LOC100131496 GC20P046944 GAPDHP54
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAPDHP54 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAPDHP54 Gene

Genomic Locations for GAPDHP54 Gene
chr20:46,997,596-46,998,488
(GRCh38/hg38)
Size:
893 bases
Orientation:
Plus strand
chr20:45,626,235-45,627,127
(GRCh37/hg19)
Size:
893 bases
Orientation:
Plus strand

Genomic View for GAPDHP54 Gene

Genes around GAPDHP54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAPDHP54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAPDHP54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAPDHP54 Gene

Proteins for GAPDHP54 Gene

Post-translational modifications for GAPDHP54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAPDHP54 Gene

Domains & Families for GAPDHP54 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAPDHP54 Gene

Function for GAPDHP54 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP54 Gene

Localization for GAPDHP54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP54 Gene

Pathways & Interactions for GAPDHP54 Gene

PathCards logo

SuperPathways for GAPDHP54 Gene

No Data Available

Interacting Proteins for GAPDHP54 Gene

Gene Ontology (GO) - Biological Process for GAPDHP54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAPDHP54 Gene

Drugs & Compounds for GAPDHP54 Gene

No Compound Related Data Available

Transcripts for GAPDHP54 Gene

mRNA/cDNA for GAPDHP54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAPDHP54 Gene

No ASD Table

Relevant External Links for GAPDHP54 Gene

GeneLoc Exon Structure for
GAPDHP54
ECgene alternative splicing isoforms for
GAPDHP54

Expression for GAPDHP54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAPDHP54 Gene

NURSA nuclear receptor signaling pathways regulating expression of GAPDHP54 Gene:

GAPDHP54
genes like me logo Genes that share expression patterns with GAPDHP54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP54 Gene

Orthologs for GAPDHP54 Gene

Evolution for GAPDHP54 Gene

ENSEMBL:
Gene Tree for GAPDHP54 (if available)
TreeFam:
Gene Tree for GAPDHP54 (if available)

No data available for Orthologs for GAPDHP54 Gene

Paralogs for GAPDHP54 Gene

No data available for Paralogs for GAPDHP54 Gene

Variants for GAPDHP54 Gene

Additional Variant Information for GAPDHP54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAPDHP54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP54 Gene

Disorders for GAPDHP54 Gene

No disorders were found for GAPDHP54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAPDHP54 Gene

Publications for GAPDHP54 Gene

No publications were found for GAPDHP54 Gene.

No data available for External Links for GAPDHP54 Gene

Products for GAPDHP54 Gene

Sources for GAPDHP54 Gene

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