Aliases for GAPDHP49 Gene
Subcategory (RNA class) for GAPDHP49 Gene
antisense
External Ids for GAPDHP49 Gene
- HGNC: 38555
- Entrez Gene: 100421189
- Ensembl: ENSG00000234285
ORGUL Members for GAPDHP49 Gene
Previous GeneCards Identifiers for GAPDHP49 Gene
- GC02U902239
- GC02M215222
- GC02M223369
Summaries for GAPDHP49 Gene
GeneCards Summary for GAPDHP49 Gene
GAPDHP49 (Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 49) is a Pseudogene, and is affiliated with the antisense RNA class.
Additional gene information for GAPDHP49 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAPDHP49 Gene
Genomics for GAPDHP49 Gene
GeneHancer (GH) Regulatory Elements for GAPDHP49 Gene
Promoters and enhancers for GAPDHP49 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J222504 | Enhancer | 0.3 | Ensembl | 600.7 | -1.1 | -1058 | 2.6 | ELF1 | GAPDHP49 GC02M222558 SGPP2 | |
| GH02J222518 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | -13.4 | -13358 | 5.2 | MAFK SP7 MZF1 ZBTB8A ZIC2 POLR2A ZNF341 ZNF561 ZNF316 ARNT | SGPP2 GAPDHP49 GC02M222558 | |
| GH02J222549 | Enhancer | 0.7 | Ensembl ENCODE | 0.3 | -44.4 | -44358 | 7.6 | ZNF384 PKNOX1 POLR2A ZBTB20 ZBTB17 NR2F2 FEZF1 | CT75 RNU6-619P SGPP2 GC02M222558 GAPDHP49 | |
| GH02J222537 | Enhancer | 0.4 | Ensembl | 0.3 | -33.7 | -33658 | 3 | JUNB BATF ETV6 | RNU6-619P CT75 SGPP2 GC02M222558 GAPDHP49 | |
| GH02J222535 | Enhancer | 0.3 | Ensembl | 0.3 | -31.2 | -31226 | 1.1 | EZH2 | RNU6-619P SGPP2 GC02M222558 GAPDHP49 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around GAPDHP49 on UCSC Golden Path with GeneCards custom track
Genomic Locations for GAPDHP49 Gene
Genomic Locations for GAPDHP49 Gene
- chr2:222,503,883-222,504,843
- (GRCh38/hg38)
- Size:
- 961 bases
- Orientation:
- Minus strand
- chr2:223,368,602-223,369,562
- (GRCh37/hg19)
- Size:
- 961 bases
- Orientation:
- Minus strand
Genomic View for GAPDHP49 Gene
Genes around GAPDHP49 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q36.1 by HGNC
- 2q36.1 by Entrez Gene
- 2q36.1 by Ensembl
GAPDHP49 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for GAPDHP49 Gene
Proteins for GAPDHP49 Gene
Post-translational modifications for GAPDHP49 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPDHP49
- Origene Custom Protein Services for GAPDHP49
No data available for DME Specific Peptides for GAPDHP49 Gene
Domains & Families for GAPDHP49 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAPDHP49 Gene
Function for GAPDHP49 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for GAPDHP49
-
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for GAPDHP49 - Now 50% OFF >
- * GAPDHP49 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * GAPDHP49 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for GAPDHP49
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for GAPDHP49 - Now 50% OFF >
- * GAPDHP49 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * GAPDHP49 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP49 Gene
Localization for GAPDHP49 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP49 Gene
Transcripts for GAPDHP49 Gene
mRNA/cDNA for GAPDHP49 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000421421 961 bps (ENST00000421421.1)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for GAPDHP49 - Now 50% OFF >
- * GAPDHP49 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * GAPDHP49 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for GAPDHP49
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for GAPDHP49 - Now 50% OFF >
- * GAPDHP49 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * GAPDHP49 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for GAPDHP49 Gene
mRNA differential expression in normal tissues according to GTEx for GAPDHP49 Gene
This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x10.2) and Skin - Not Sun Exposed (Suprapubic) (x9.9).
NURSA nuclear receptor signaling pathways regulating expression of GAPDHP49 Gene:
GAPDHP49
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP49 Gene
Orthologs for GAPDHP49 Gene
No data available for Orthologs for GAPDHP49 Gene
Paralogs for GAPDHP49 Gene
No data available for Paralogs for GAPDHP49 Gene
Variants for GAPDHP49 Gene
Additional Variant Information for GAPDHP49 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- GAPDHP49
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP49 Gene
Disorders for GAPDHP49 Gene
No disorders were found for GAPDHP49 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAPDHP49 Gene
Publications for GAPDHP49 Gene
No publications were found for GAPDHP49 Gene.
No data available for External Links for GAPDHP49 Gene
Products for GAPDHP49 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for GAPDHP49
- Origene Custom Protein Services for GAPDHP49
- Browse OriGene Inhibitory RNA Products For GAPDHP49
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for GAPDHP49
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For GAPDHP49
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for GAPDHP49
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for GAPDHP49
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for GAPDHP49
- Search GeneCopoeia for miRNA 3'UTR Target clone products for GAPDHP49
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for GAPDHP49
Sources for GAPDHP49 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind