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Aliases for GAPDHP42 Gene

Aliases for GAPDHP42 Gene

  • Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 42 2 3 5

External Ids for GAPDHP42 Gene

Previous GeneCards Identifiers for GAPDHP42 Gene

  • GC06P070455
  • GC06P067646

Summaries for GAPDHP42 Gene

GeneCards Summary for GAPDHP42 Gene

GAPDHP42 (Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 42) is a Pseudogene.

Additional gene information for GAPDHP42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAPDHP42 Gene

Genomics for GAPDHP42 Gene

GeneHancer (GH) Regulatory Elements for GAPDHP42 Gene

Promoters and enhancers for GAPDHP42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J069795 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11 +50.6 50642 3.3 ZNF652 SP1 ZFX CTCF ELF3 ZNF148 NKRF CEBPG GTF2F1 CSDE1 LMBRD1 GAPDHP42 GC06M069784 GC06P069860
GH06J069758 Enhancer 1 Ensembl dbSUPER 11.1 +13.3 13301 1.8 CC2D1A CBFA2T2 ZNF148 TRIM24 ZNF639 SMARCA4 DPF2 IKZF1 HDAC1 NR2C1 GAPDHP42 COL19A1 GC06P069743 GC06M069784 LMBRD1
GH06J069779 Enhancer 1 Ensembl ENCODE 11 +34.9 34915 2.7 ELF3 TFE3 SP1 IKZF1 RXRA GATAD2A RXRB IKZF2 FOXA2 JUND LMBRD1 GAPDHP42 GC06M069784
GH06J069783 Enhancer 1.1 Ensembl dbSUPER 9.1 +38.9 38900 2.6 CC2D1A ZKSCAN8 CBFA2T2 TRIM24 PRDM1 SMARCA4 MTA1 IKZF1 GMEB1 DPF2 GC06M069784 GAPDHP42 COL19A1 GC06P069860 LMBRD1
GH06J069892 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.4 +148.5 148493 3 ZNF687 MLLT1 MZF1 ZNF680 IKZF1 ZBTB33 ZBTB8A IKZF2 ZNF692 ZBTB44 COL19A1 GAPDHP42 GC06M069905 LMBRD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAPDHP42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAPDHP42 Gene

Genomic Locations for GAPDHP42 Gene
chr6:69,745,800-69,747,055
(GRCh38/hg38)
Size:
1,256 bases
Orientation:
Plus strand
chr6:70,455,692-70,456,947
(GRCh37/hg19)
Size:
1,256 bases
Orientation:
Plus strand

Genomic View for GAPDHP42 Gene

Genes around GAPDHP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAPDHP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAPDHP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAPDHP42 Gene

Proteins for GAPDHP42 Gene

Post-translational modifications for GAPDHP42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAPDHP42 Gene

Domains & Families for GAPDHP42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAPDHP42 Gene

Function for GAPDHP42 Gene

Phenotypes From GWAS Catalog for GAPDHP42 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP42 Gene

Localization for GAPDHP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP42 Gene

Pathways & Interactions for GAPDHP42 Gene

PathCards logo

SuperPathways for GAPDHP42 Gene

No Data Available

Interacting Proteins for GAPDHP42 Gene

Gene Ontology (GO) - Biological Process for GAPDHP42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAPDHP42 Gene

Drugs & Compounds for GAPDHP42 Gene

No Compound Related Data Available

Transcripts for GAPDHP42 Gene

mRNA/cDNA for GAPDHP42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAPDHP42 Gene

No ASD Table

Relevant External Links for GAPDHP42 Gene

GeneLoc Exon Structure for
GAPDHP42
ECgene alternative splicing isoforms for
GAPDHP42

Expression for GAPDHP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAPDHP42 Gene

mRNA differential expression in normal tissues according to GTEx for GAPDHP42 Gene

This gene is overexpressed in Brain - Cerebellum (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of GAPDHP42 Gene:

GAPDHP42
genes like me logo Genes that share expression patterns with GAPDHP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP42 Gene

Orthologs for GAPDHP42 Gene

Evolution for GAPDHP42 Gene

ENSEMBL:
Gene Tree for GAPDHP42 (if available)
TreeFam:
Gene Tree for GAPDHP42 (if available)

No data available for Orthologs for GAPDHP42 Gene

Paralogs for GAPDHP42 Gene

No data available for Paralogs for GAPDHP42 Gene

Variants for GAPDHP42 Gene

Additional Variant Information for GAPDHP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAPDHP42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP42 Gene

Disorders for GAPDHP42 Gene

Additional Disease Information for GAPDHP42

Genetic Association Database
(GAD)

No disorders were found for GAPDHP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAPDHP42 Gene

Publications for GAPDHP42 Gene

  1. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 45 58

No data available for External Links for GAPDHP42 Gene

Products for GAPDHP42 Gene

Sources for GAPDHP42 Gene

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