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Aliases for GAPDHP40 Gene

Aliases for GAPDHP40 Gene

  • Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 40 2 3 5
  • Glyceraldehyde-3-Phosphate Dehydrogenase Pseudogene 3

External Ids for GAPDHP40 Gene

Previous GeneCards Identifiers for GAPDHP40 Gene

  • GC05M159377
  • GC05M154471

Summaries for GAPDHP40 Gene

GeneCards Summary for GAPDHP40 Gene

GAPDHP40 (Glyceraldehyde 3 Phosphate Dehydrogenase Pseudogene 40) is a Pseudogene.

Additional gene information for GAPDHP40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAPDHP40 Gene

Genomics for GAPDHP40 Gene

GeneHancer (GH) Regulatory Elements for GAPDHP40 Gene

Promoters and enhancers for GAPDHP40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J159951 Enhancer 0.4 Ensembl 600.7 -0.3 -332 0.2 FOS JUND GAPDHP40 GC05P159980 ADRA1B
GH05J159947 Enhancer 0.7 Ensembl ENCODE 0.7 +3.0 2970 2.4 HNF4A CEBPB ZNF664 CEBPG MAX GAPDHP40 LINC01847 ADRA1B
GH05J159974 Enhancer 0.8 Ensembl ENCODE 0.3 -25.2 -25232 6.8 ZNF121 CTCF MAFK SP7 POLR2A ZNF316 JUND MAFG ZBTB11 ZNF335 SLU7 GC05P159980 GAPDHP40 ADRA1B
GH05J159970 Enhancer 0.4 ENCODE 0.4 -19.6 -19612 1.2 EZH2 FOS JUND GC05P159980 GAPDHP40 ADRA1B
GH05J159945 Enhancer 0.2 Ensembl 0.4 +6.0 5968 0.4 GAPDHP40 LINC01847 ADRA1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GAPDHP40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GAPDHP40 Gene

Genomic Locations for GAPDHP40 Gene
chr5:159,950,291-159,951,569
(GRCh38/hg38)
Size:
1,279 bases
Orientation:
Minus strand
chr5:159,377,299-159,378,576
(GRCh37/hg19)
Size:
1,278 bases
Orientation:
Minus strand

Genomic View for GAPDHP40 Gene

Genes around GAPDHP40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAPDHP40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAPDHP40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAPDHP40 Gene

Proteins for GAPDHP40 Gene

Post-translational modifications for GAPDHP40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GAPDHP40 Gene

Domains & Families for GAPDHP40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GAPDHP40 Gene

Function for GAPDHP40 Gene

Phenotypes From GWAS Catalog for GAPDHP40 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAPDHP40 Gene

Localization for GAPDHP40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GAPDHP40 Gene

Pathways & Interactions for GAPDHP40 Gene

PathCards logo

SuperPathways for GAPDHP40 Gene

No Data Available

Interacting Proteins for GAPDHP40 Gene

Gene Ontology (GO) - Biological Process for GAPDHP40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAPDHP40 Gene

Drugs & Compounds for GAPDHP40 Gene

No Compound Related Data Available

Transcripts for GAPDHP40 Gene

mRNA/cDNA for GAPDHP40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAPDHP40 Gene

No ASD Table

Relevant External Links for GAPDHP40 Gene

GeneLoc Exon Structure for
GAPDHP40
ECgene alternative splicing isoforms for
GAPDHP40

Expression for GAPDHP40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GAPDHP40 Gene

mRNA differential expression in normal tissues according to GTEx for GAPDHP40 Gene

This gene is overexpressed in Muscle - Skeletal (x4.6) and Liver (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of GAPDHP40 Gene:

GAPDHP40
genes like me logo Genes that share expression patterns with GAPDHP40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GAPDHP40 Gene

Orthologs for GAPDHP40 Gene

Evolution for GAPDHP40 Gene

ENSEMBL:
Gene Tree for GAPDHP40 (if available)
TreeFam:
Gene Tree for GAPDHP40 (if available)

No data available for Orthologs for GAPDHP40 Gene

Paralogs for GAPDHP40 Gene

No data available for Paralogs for GAPDHP40 Gene

Variants for GAPDHP40 Gene

Additional Variant Information for GAPDHP40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAPDHP40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GAPDHP40 Gene

Disorders for GAPDHP40 Gene

No disorders were found for GAPDHP40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GAPDHP40 Gene

Publications for GAPDHP40 Gene

No publications were found for GAPDHP40 Gene.

No data available for External Links for GAPDHP40 Gene

Products for GAPDHP40 Gene

Sources for GAPDHP40 Gene

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